Cluster: HRGMv2_2087_CGC14
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate: galactan
- Genome ID: HRGMv2_2087
- CGC Family ID: CGCFAM_00078
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2087_4 | HRGMv2_2087_4_41 | 43134 | 44495 | + | 2.A.2.3.2 |
| CAZyme | HRGMv2_2087_4 | HRGMv2_2087_4_42 | 44497 | 46455 | + | GH2 |
| pfam | HRGMv2_2087_4 | HRGMv2_2087_4_43 | 46439 | 47386 | + | Bgal_small_N |
| TC | HRGMv2_2087_4 | HRGMv2_2087_4_44 | 47402 | 48058 | + | 2.A.115.2.3 |
Gene ID: HRGMv2_2087_4_41
Type: TC
Location: 43134 - 44495 (+)
Type: TC
Location: 43134 - 44495 (+)
Gene ID: HRGMv2_2087_4_42
Type: CAZyme
Location: 44497 - 46455 (+)
Type: CAZyme
Location: 44497 - 46455 (+)
Gene ID: HRGMv2_2087_4_43
Type: pfam
Location: 46439 - 47386 (+)
Type: pfam
Location: 46439 - 47386 (+)
Gene ID: HRGMv2_2087_4_44
Type: TC
Location: 47402 - 48058 (+)
Type: TC
Location: 47402 - 48058 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2087_4_42 | vegetarian > vegan | 1.18507 | 0.02211 |