Cluster: HRGMv2_2087_CGC12
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2087
- CGC Family ID: CGCFAM_03384
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2087_3 | HRGMv2_2087_3_72 | 69837 | 70070 | - | 3.D.1.6.4 |
| STP | HRGMv2_2087_3 | HRGMv2_2087_3_73 | 70281 | 71219 | - | Glucokinase |
| CAZyme | HRGMv2_2087_3 | HRGMv2_2087_3_74 | 71371 | 73752 | - | GT51 |
| TF | HRGMv2_2087_3 | HRGMv2_2087_3_75 | 73851 | 74399 | - | SpoVT_AbrB |
| TC | HRGMv2_2087_3 | HRGMv2_2087_3_76 | 74565 | 76661 | + | 1.B.52.2.1 |
Gene ID: HRGMv2_2087_3_72
Type: TC
Location: 69837 - 70070 (-)
Type: TC
Location: 69837 - 70070 (-)
Gene ID: HRGMv2_2087_3_73
Type: STP
Location: 70281 - 71219 (-)
Type: STP
Location: 70281 - 71219 (-)
Gene ID: HRGMv2_2087_3_74
Type: CAZyme
Location: 71371 - 73752 (-)
Type: CAZyme
Location: 71371 - 73752 (-)
Gene ID: HRGMv2_2087_3_75
Type: TF
Location: 73851 - 74399 (-)
Type: TF
Location: 73851 - 74399 (-)
Gene ID: HRGMv2_2087_3_76
Type: TC
Location: 74565 - 76661 (+)
Type: TC
Location: 74565 - 76661 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.