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Cluster: HRGMv2_2087_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2087_1 HRGMv2_2087_1_6 5306 6220 + 3.A.1.1.10
TC HRGMv2_2087_1 HRGMv2_2087_1_7 6236 7138 + 3.A.1.1.29
STP HRGMv2_2087_1 HRGMv2_2087_1_8 7198 8976 + SBP_bac_1
TF HRGMv2_2087_1 HRGMv2_2087_1_9 9048 10598 - HTH_AraC
TC HRGMv2_2087_1 HRGMv2_2087_1_10 10616 12394 - 8.A.59.2.1
CAZyme HRGMv2_2087_1 HRGMv2_2087_1_11 12567 14903 + GH31_3
CAZyme HRGMv2_2087_1 HRGMv2_2087_1_12 14926 17142 + GH3
STP HRGMv2_2087_1 HRGMv2_2087_1_13 17239 17751 + NUDIX
CAZyme HRGMv2_2087_1 HRGMv2_2087_1_14 17693 19177 + GH29
Gene ID: HRGMv2_2087_1_6
Type: TC
Location: 5306 - 6220 (+)
Gene ID: HRGMv2_2087_1_7
Type: TC
Location: 6236 - 7138 (+)
Gene ID: HRGMv2_2087_1_8
Type: STP
Location: 7198 - 8976 (+)
Gene ID: HRGMv2_2087_1_9
Type: TF
Location: 9048 - 10598 (-)
Gene ID: HRGMv2_2087_1_10
Type: TC
Location: 10616 - 12394 (-)
Gene ID: HRGMv2_2087_1_11
Type: CAZyme
Location: 12567 - 14903 (+)
Gene ID: HRGMv2_2087_1_12
Type: CAZyme
Location: 14926 - 17142 (+)
Gene ID: HRGMv2_2087_1_13
Type: STP
Location: 17239 - 17751 (+)
Gene ID: HRGMv2_2087_1_14
Type: CAZyme
Location: 17693 - 19177 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2087_1_9 vegan > omnivore 1.32206 0.02772
HRGMv2_2087_1_11 vegan > omnivore 1.28067 0.03247
HRGMv2_2087_1_12 vegan > omnivore 1.01789 0.02699
HRGMv2_2087_1_14 vegan > omnivore 1.10866 0.02699

🧭 Explore Read Mapping of CGC

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