Cluster: HRGMv2_2076_CGC15
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2076
- CGC Family ID: CGCFAM_01573
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2076_15 | HRGMv2_2076_15_13 | 19781 | 20977 | + | 2.A.36.2.1 |
| TC | HRGMv2_2076_15 | HRGMv2_2076_15_14 | 21132 | 22919 | + | 3.A.1.106.12 |
| TC | HRGMv2_2076_15 | HRGMv2_2076_15_15 | 22916 | 24691 | + | 3.A.1.106.11 |
| pfam | HRGMv2_2076_15 | HRGMv2_2076_15_16 | 24691 | 25116 | + | YgbA_NO |
| CAZyme | HRGMv2_2076_15 | HRGMv2_2076_15_17 | 25325 | 27760 | - | GH94 |
| TF | HRGMv2_2076_15 | HRGMv2_2076_15_18 | 28252 | 29274 | + | LacI |
| NULL(UNKNOWN) | HRGMv2_2076_15 | HRGMv2_2076_15_19 | 29375 | 30781 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2076_15 | HRGMv2_2076_15_20 | 31032 | 31940 | + | 3.A.1.1.4 |
| TC | HRGMv2_2076_15 | HRGMv2_2076_15_21 | 31956 | 32822 | + | 3.A.1.1.13 |
| NULL(UNKNOWN) | HRGMv2_2076_15 | HRGMv2_2076_15_22 | 33019 | 33180 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2076_15 | HRGMv2_2076_15_23 | 33303 | 33542 | + | zf-like |
| TC | HRGMv2_2076_15 | HRGMv2_2076_15_24 | 33967 | 34191 | + | 3.D.1.6.4 |
Gene ID: HRGMv2_2076_15_13
Type: TC
Location: 19781 - 20977 (+)
Type: TC
Location: 19781 - 20977 (+)
Gene ID: HRGMv2_2076_15_14
Type: TC
Location: 21132 - 22919 (+)
Type: TC
Location: 21132 - 22919 (+)
Gene ID: HRGMv2_2076_15_15
Type: TC
Location: 22916 - 24691 (+)
Type: TC
Location: 22916 - 24691 (+)
Gene ID: HRGMv2_2076_15_16
Type: pfam
Location: 24691 - 25116 (+)
Type: pfam
Location: 24691 - 25116 (+)
Gene ID: HRGMv2_2076_15_17
Type: CAZyme
Location: 25325 - 27760 (-)
Type: CAZyme
Location: 25325 - 27760 (-)
Gene ID: HRGMv2_2076_15_18
Type: TF
Location: 28252 - 29274 (+)
Type: TF
Location: 28252 - 29274 (+)
Gene ID: HRGMv2_2076_15_19
Type:
Location: 29375 - 30781 (+)
Type:
Location: 29375 - 30781 (+)
Gene ID: HRGMv2_2076_15_20
Type: TC
Location: 31032 - 31940 (+)
Type: TC
Location: 31032 - 31940 (+)
Gene ID: HRGMv2_2076_15_21
Type: TC
Location: 31956 - 32822 (+)
Type: TC
Location: 31956 - 32822 (+)
Gene ID: HRGMv2_2076_15_22
Type:
Location: 33019 - 33180 (+)
Type:
Location: 33019 - 33180 (+)
Gene ID: HRGMv2_2076_15_23
Type: pfam
Location: 33303 - 33542 (+)
Type: pfam
Location: 33303 - 33542 (+)
Gene ID: HRGMv2_2076_15_24
Type: TC
Location: 33967 - 34191 (+)
Type: TC
Location: 33967 - 34191 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.