Cluster: HRGMv2_2075_CGC48
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: HRGMv2_2075
- CGC Family ID: CGCFAM_00045
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2075_41 | HRGMv2_2075_41_15 | 17236 | 18963 | - | CBM34 | GH13_20 |
| TC | HRGMv2_2075_41 | HRGMv2_2075_41_16 | 18979 | 19824 | - | 3.A.1.1.27 |
| TC | HRGMv2_2075_41 | HRGMv2_2075_41_17 | 19832 | 20722 | - | 3.A.1.1.44 |
| TC | HRGMv2_2075_41 | HRGMv2_2075_41_18 | 20760 | 22010 | - | 3.A.1.1.16 |
Gene ID: HRGMv2_2075_41_15
Type: CAZyme
Location: 17236 - 18963 (-)
Type: CAZyme
Location: 17236 - 18963 (-)
Gene ID: HRGMv2_2075_41_16
Type: TC
Location: 18979 - 19824 (-)
Type: TC
Location: 18979 - 19824 (-)
Gene ID: HRGMv2_2075_41_17
Type: TC
Location: 19832 - 20722 (-)
Type: TC
Location: 19832 - 20722 (-)
Gene ID: HRGMv2_2075_41_18
Type: TC
Location: 20760 - 22010 (-)
Type: TC
Location: 20760 - 22010 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor sp003447295
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2075_41_17 | vegan > omnivore | 1.38121 | 0.04238 |
| HRGMv2_2075_41_17 | vegetarian > omnivore | 1.26456 | 0.00699 |
| HRGMv2_2075_41_18 | vegetarian > omnivore | 1.21511 | 0.00699 |