Cluster: HRGMv2_2075_CGC47
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2075
- CGC Family ID: CGCFAM_01676
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2075_39 | HRGMv2_2075_39_1 | 278 | 2203 | - | 3.A.1.135.5 |
| TC | HRGMv2_2075_39 | HRGMv2_2075_39_2 | 2203 | 3957 | - | 3.A.1.135.5 |
| TF | HRGMv2_2075_39 | HRGMv2_2075_39_3 | 4055 | 4630 | - | MarR |
| pfam | HRGMv2_2075_39 | HRGMv2_2075_39_4 | 5406 | 6467 | - | Fe-ADH | Fe-ADH_2 |
| TC | HRGMv2_2075_39 | HRGMv2_2075_39_5 | 6778 | 7278 | - | 9.A.11.1.1 |
| peptidase | HRGMv2_2075_39 | HRGMv2_2075_39_6 | 7590 | 9716 | + | C11.UPA |
| TF | HRGMv2_2075_39 | HRGMv2_2075_39_7 | 10081 | 10734 | - | SfsA |
| TC | HRGMv2_2075_39 | HRGMv2_2075_39_8 | 10746 | 12095 | - | 2.A.66.1.33 |
| NULL(UNKNOWN) | HRGMv2_2075_39 | HRGMv2_2075_39_9 | 12099 | 12740 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_2075_39 | HRGMv2_2075_39_10 | 12753 | 13370 | - | Sigma70_r2 | Sigma70_r4_2 |
| TC | HRGMv2_2075_39 | HRGMv2_2075_39_11 | 13404 | 15161 | - | 1.B.52.2.1 |
| pfam | HRGMv2_2075_39 | HRGMv2_2075_39_12 | 15284 | 16057 | - | ThiF |
| pfam | HRGMv2_2075_39 | HRGMv2_2075_39_13 | 16279 | 17115 | - | AP_endonuc_2 |
| CAZyme | HRGMv2_2075_39 | HRGMv2_2075_39_14 | 17166 | 18722 | - | GH28 |
Gene ID: HRGMv2_2075_39_1
Type: TC
Location: 278 - 2203 (-)
Type: TC
Location: 278 - 2203 (-)
Gene ID: HRGMv2_2075_39_2
Type: TC
Location: 2203 - 3957 (-)
Type: TC
Location: 2203 - 3957 (-)
Gene ID: HRGMv2_2075_39_3
Type: TF
Location: 4055 - 4630 (-)
Type: TF
Location: 4055 - 4630 (-)
Gene ID: HRGMv2_2075_39_4
Type: pfam
Location: 5406 - 6467 (-)
Type: pfam
Location: 5406 - 6467 (-)
Gene ID: HRGMv2_2075_39_5
Type: TC
Location: 6778 - 7278 (-)
Type: TC
Location: 6778 - 7278 (-)
Gene ID: HRGMv2_2075_39_6
Type: peptidase
Location: 7590 - 9716 (+)
Type: peptidase
Location: 7590 - 9716 (+)
Gene ID: HRGMv2_2075_39_7
Type: TF
Location: 10081 - 10734 (-)
Type: TF
Location: 10081 - 10734 (-)
Gene ID: HRGMv2_2075_39_8
Type: TC
Location: 10746 - 12095 (-)
Type: TC
Location: 10746 - 12095 (-)
Gene ID: HRGMv2_2075_39_9
Type:
Location: 12099 - 12740 (-)
Type:
Location: 12099 - 12740 (-)
Gene ID: HRGMv2_2075_39_10
Type: STP
Location: 12753 - 13370 (-)
Type: STP
Location: 12753 - 13370 (-)
Gene ID: HRGMv2_2075_39_11
Type: TC
Location: 13404 - 15161 (-)
Type: TC
Location: 13404 - 15161 (-)
Gene ID: HRGMv2_2075_39_12
Type: pfam
Location: 15284 - 16057 (-)
Type: pfam
Location: 15284 - 16057 (-)
Gene ID: HRGMv2_2075_39_13
Type: pfam
Location: 16279 - 17115 (-)
Type: pfam
Location: 16279 - 17115 (-)
Gene ID: HRGMv2_2075_39_14
Type: CAZyme
Location: 17166 - 18722 (-)
Type: CAZyme
Location: 17166 - 18722 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor sp003447295
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2075_39_9 | vegetarian > vegan | 1.22605 | 0.00229 |