Cluster: HRGMv2_2075_CGC36
🧬 Cluster Details
- Gene Count: 22
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2075
- CGC Family ID: CGCFAM_00704
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2075_19 | HRGMv2_2075_19_3 | 1783 | 3831 | - | 3.A.7.7.1 |
| TF | HRGMv2_2075_19 | HRGMv2_2075_19_4 | 3856 | 5151 | - | 0043095 |
| TC | HRGMv2_2075_19 | HRGMv2_2075_19_5 | 5181 | 6899 | - | 9.B.34.1.2 |
| pfam | HRGMv2_2075_19 | HRGMv2_2075_19_6 | 6915 | 8000 | - | Semialdhyde_dh | Semialdhyde_dhC |
| pfam | HRGMv2_2075_19 | HRGMv2_2075_19_7 | 8064 | 9485 | - | Lyase_1 | ASL_C2 |
| TC | HRGMv2_2075_19 | HRGMv2_2075_19_8 | 9683 | 10450 | + | 3.A.1.17.8 |
| pfam | HRGMv2_2075_19 | HRGMv2_2075_19_9 | 10440 | 11261 | + | BPD_transp_1 |
| TC | HRGMv2_2075_19 | HRGMv2_2075_19_10 | 11588 | 12547 | - | 3.A.1.2.12 |
| TC | HRGMv2_2075_19 | HRGMv2_2075_19_11 | 12548 | 13654 | - | 3.A.1.2.17 |
| TC | HRGMv2_2075_19 | HRGMv2_2075_19_12 | 13659 | 15203 | - | 3.A.1.2.12 |
| TC | HRGMv2_2075_19 | HRGMv2_2075_19_13 | 15284 | 16465 | - | 3.A.1.2.17 |
| TC | HRGMv2_2075_19 | HRGMv2_2075_19_14 | 16558 | 17415 | - | 1.A.23.2.1 |
| CAZyme | HRGMv2_2075_19 | HRGMv2_2075_19_15 | 17422 | 19758 | - | CBM48 | GH13_9 |
| pfam | HRGMv2_2075_19 | HRGMv2_2075_19_16 | 19828 | 21069 | - | DUF1015 |
| pfam | HRGMv2_2075_19 | HRGMv2_2075_19_17 | 21310 | 22362 | - | Lactonase |
| TC | HRGMv2_2075_19 | HRGMv2_2075_19_18 | 22634 | 23707 | + | 3.A.1.11.8 |
| TC | HRGMv2_2075_19 | HRGMv2_2075_19_19 | 23700 | 24512 | + | 3.A.1.11.8 |
| TC | HRGMv2_2075_19 | HRGMv2_2075_19_20 | 24509 | 25285 | + | 3.A.1.11.1 |
| TC | HRGMv2_2075_19 | HRGMv2_2075_19_21 | 25316 | 26380 | + | 3.A.1.11.7 |
| NULL(UNKNOWN) | HRGMv2_2075_19 | HRGMv2_2075_19_22 | 26450 | 26692 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2075_19 | HRGMv2_2075_19_23 | 26727 | 27299 | - | DUF5662 |
| CAZyme | HRGMv2_2075_19 | HRGMv2_2075_19_24 | 27309 | 29243 | - | GH13_11 |
Gene ID: HRGMv2_2075_19_3
Type: TC
Location: 1783 - 3831 (-)
Type: TC
Location: 1783 - 3831 (-)
Gene ID: HRGMv2_2075_19_4
Type: TF
Location: 3856 - 5151 (-)
Type: TF
Location: 3856 - 5151 (-)
Gene ID: HRGMv2_2075_19_5
Type: TC
Location: 5181 - 6899 (-)
Type: TC
Location: 5181 - 6899 (-)
Gene ID: HRGMv2_2075_19_6
Type: pfam
Location: 6915 - 8000 (-)
Type: pfam
Location: 6915 - 8000 (-)
Gene ID: HRGMv2_2075_19_7
Type: pfam
Location: 8064 - 9485 (-)
Type: pfam
Location: 8064 - 9485 (-)
Gene ID: HRGMv2_2075_19_8
Type: TC
Location: 9683 - 10450 (+)
Type: TC
Location: 9683 - 10450 (+)
Gene ID: HRGMv2_2075_19_9
Type: pfam
Location: 10440 - 11261 (+)
Type: pfam
Location: 10440 - 11261 (+)
Gene ID: HRGMv2_2075_19_10
Type: TC
Location: 11588 - 12547 (-)
Type: TC
Location: 11588 - 12547 (-)
Gene ID: HRGMv2_2075_19_11
Type: TC
Location: 12548 - 13654 (-)
Type: TC
Location: 12548 - 13654 (-)
Gene ID: HRGMv2_2075_19_12
Type: TC
Location: 13659 - 15203 (-)
Type: TC
Location: 13659 - 15203 (-)
Gene ID: HRGMv2_2075_19_13
Type: TC
Location: 15284 - 16465 (-)
Type: TC
Location: 15284 - 16465 (-)
Gene ID: HRGMv2_2075_19_14
Type: TC
Location: 16558 - 17415 (-)
Type: TC
Location: 16558 - 17415 (-)
Gene ID: HRGMv2_2075_19_15
Type: CAZyme
Location: 17422 - 19758 (-)
Type: CAZyme
Location: 17422 - 19758 (-)
Gene ID: HRGMv2_2075_19_16
Type: pfam
Location: 19828 - 21069 (-)
Type: pfam
Location: 19828 - 21069 (-)
Gene ID: HRGMv2_2075_19_17
Type: pfam
Location: 21310 - 22362 (-)
Type: pfam
Location: 21310 - 22362 (-)
Gene ID: HRGMv2_2075_19_18
Type: TC
Location: 22634 - 23707 (+)
Type: TC
Location: 22634 - 23707 (+)
Gene ID: HRGMv2_2075_19_19
Type: TC
Location: 23700 - 24512 (+)
Type: TC
Location: 23700 - 24512 (+)
Gene ID: HRGMv2_2075_19_20
Type: TC
Location: 24509 - 25285 (+)
Type: TC
Location: 24509 - 25285 (+)
Gene ID: HRGMv2_2075_19_21
Type: TC
Location: 25316 - 26380 (+)
Type: TC
Location: 25316 - 26380 (+)
Gene ID: HRGMv2_2075_19_22
Type:
Location: 26450 - 26692 (-)
Type:
Location: 26450 - 26692 (-)
Gene ID: HRGMv2_2075_19_23
Type: pfam
Location: 26727 - 27299 (-)
Type: pfam
Location: 26727 - 27299 (-)
Gene ID: HRGMv2_2075_19_24
Type: CAZyme
Location: 27309 - 29243 (-)
Type: CAZyme
Location: 27309 - 29243 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor sp003447295
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.