Cluster: HRGMv2_2075_CGC31
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2075
- CGC Family ID: CGCFAM_05916
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2075_15 | HRGMv2_2075_15_24 | 31576 | 32934 | + | 3.A.1.1.30 |
| TC | HRGMv2_2075_15 | HRGMv2_2075_15_25 | 33024 | 33920 | + | 3.A.1.1.4 |
| TC | HRGMv2_2075_15 | HRGMv2_2075_15_26 | 33917 | 34741 | + | 3.A.1.1.45 |
| CAZyme | HRGMv2_2075_15 | HRGMv2_2075_15_27 | 34893 | 36143 | + | GH28 |
| CAZyme | HRGMv2_2075_15 | HRGMv2_2075_15_28 | 36156 | 37037 | + | GH43_17 |
Gene ID: HRGMv2_2075_15_24
Type: TC
Location: 31576 - 32934 (+)
Type: TC
Location: 31576 - 32934 (+)
Gene ID: HRGMv2_2075_15_25
Type: TC
Location: 33024 - 33920 (+)
Type: TC
Location: 33024 - 33920 (+)
Gene ID: HRGMv2_2075_15_26
Type: TC
Location: 33917 - 34741 (+)
Type: TC
Location: 33917 - 34741 (+)
Gene ID: HRGMv2_2075_15_27
Type: CAZyme
Location: 34893 - 36143 (+)
Type: CAZyme
Location: 34893 - 36143 (+)
Gene ID: HRGMv2_2075_15_28
Type: CAZyme
Location: 36156 - 37037 (+)
Type: CAZyme
Location: 36156 - 37037 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor sp003447295
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2075_15_25 | vegetarian > omnivore | 2.38526 | 0.00699 |
| HRGMv2_2075_15_25 | vegetarian > vegan | 3.75350 | 0.00229 |
| HRGMv2_2075_15_26 | vegetarian > omnivore | 1.81801 | 0.00699 |
| HRGMv2_2075_15_26 | vegetarian > vegan | 1.83450 | 0.00229 |