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Cluster: HRGMv2_2075_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2075_3 HRGMv2_2075_3_104 126609 128345 + GH63
TF HRGMv2_2075_3 HRGMv2_2075_3_105 128348 129886 + HTH_AraC
STP HRGMv2_2075_3 HRGMv2_2075_3_106 129998 131521 + SBP_bac_1
TC HRGMv2_2075_3 HRGMv2_2075_3_107 131605 132525 + 3.A.1.1.20
TC HRGMv2_2075_3 HRGMv2_2075_3_108 132537 133430 + 3.A.1.1.29
CAZyme HRGMv2_2075_3 HRGMv2_2075_3_109 133464 136016 + GH3
NULL(UNKNOWN) HRGMv2_2075_3 HRGMv2_2075_3_110 135963 136088 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2075_3 HRGMv2_2075_3_111 136036 136557 - 4HBT
TC HRGMv2_2075_3 HRGMv2_2075_3_112 136836 137321 + 9.A.11.1.1
Gene ID: HRGMv2_2075_3_104
Type: CAZyme
Location: 126609 - 128345 (+)
Gene ID: HRGMv2_2075_3_105
Type: TF
Location: 128348 - 129886 (+)
Gene ID: HRGMv2_2075_3_106
Type: STP
Location: 129998 - 131521 (+)
Gene ID: HRGMv2_2075_3_107
Type: TC
Location: 131605 - 132525 (+)
Gene ID: HRGMv2_2075_3_108
Type: TC
Location: 132537 - 133430 (+)
Gene ID: HRGMv2_2075_3_109
Type: CAZyme
Location: 133464 - 136016 (+)
Gene ID: HRGMv2_2075_3_110
Type:
Location: 135963 - 136088 (-)
Gene ID: HRGMv2_2075_3_111
Type: pfam
Location: 136036 - 136557 (-)
Gene ID: HRGMv2_2075_3_112
Type: TC
Location: 136836 - 137321 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2075_3_105 vegetarian > omnivore 2.28315 0.00699
HRGMv2_2075_3_105 vegetarian > vegan 2.22736 0.00229

🧭 Explore Read Mapping of CGC

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