dbCAN Logo

Cluster: HRGMv2_2073_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2073_63 HRGMv2_2073_63_2 2017 3099 - 2.A.86.1.9
pfam HRGMv2_2073_63 HRGMv2_2073_63_3 3146 3910 - PseudoU_synth_2
pfam HRGMv2_2073_63 HRGMv2_2073_63_4 3938 5365 - Methyltr_RsmB-F | Methyltranf_PUA | Methyltr_RsmF_N | RsmF_methylt_CI
CAZyme HRGMv2_2073_63 HRGMv2_2073_63_5 5574 6740 + GH5_2
pfam HRGMv2_2073_63 HRGMv2_2073_63_6 6749 7309 - DUF436
TC HRGMv2_2073_63 HRGMv2_2073_63_7 7361 8518 - 2.A.45.2.6
pfam HRGMv2_2073_63 HRGMv2_2073_63_8 8612 9199 + Mntp | Mntp
TC HRGMv2_2073_63 HRGMv2_2073_63_9 9309 10772 + 9.A.11.1.1
Gene ID: HRGMv2_2073_63_2
Type: TC
Location: 2017 - 3099 (-)
Gene ID: HRGMv2_2073_63_3
Type: pfam
Location: 3146 - 3910 (-)
Gene ID: HRGMv2_2073_63_4
Type: pfam
Location: 3938 - 5365 (-)
Gene ID: HRGMv2_2073_63_5
Type: CAZyme
Location: 5574 - 6740 (+)
Gene ID: HRGMv2_2073_63_6
Type: pfam
Location: 6749 - 7309 (-)
Gene ID: HRGMv2_2073_63_7
Type: TC
Location: 7361 - 8518 (-)
Gene ID: HRGMv2_2073_63_8
Type: pfam
Location: 8612 - 9199 (+)
Gene ID: HRGMv2_2073_63_9
Type: TC
Location: 9309 - 10772 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2073_63_2 vegetarian > vegan 1.18464 0.00566
HRGMv2_2073_63_3 vegetarian > vegan 1.13860 0.00566
HRGMv2_2073_63_7 vegetarian > vegan 1.14679 0.00566

🧭 Explore Read Mapping of CGC

← Back to Cluster List