Cluster: HRGMv2_2073_CGC20
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2073
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2073_17 | HRGMv2_2073_17_24 | 24602 | 27496 | + | 3.A.3.5.15 |
| TC | HRGMv2_2073_17 | HRGMv2_2073_17_25 | 28152 | 30752 | + | 3.A.9.1.2 |
| pfam | HRGMv2_2073_17 | HRGMv2_2073_17_26 | 30848 | 31021 | + | DUF4250 |
| pfam | HRGMv2_2073_17 | HRGMv2_2073_17_27 | 31014 | 32243 | + | RACo_C_ter | RACo_C_ter | Raco_middle |
| TC | HRGMv2_2073_17 | HRGMv2_2073_17_28 | 32346 | 34562 | + | 1.B.52.2.2 |
| CAZyme | HRGMv2_2073_17 | HRGMv2_2073_17_29 | 34562 | 35386 | + | CE4 |
Gene ID: HRGMv2_2073_17_24
Type: TC
Location: 24602 - 27496 (+)
Type: TC
Location: 24602 - 27496 (+)
Gene ID: HRGMv2_2073_17_25
Type: TC
Location: 28152 - 30752 (+)
Type: TC
Location: 28152 - 30752 (+)
Gene ID: HRGMv2_2073_17_26
Type: pfam
Location: 30848 - 31021 (+)
Type: pfam
Location: 30848 - 31021 (+)
Gene ID: HRGMv2_2073_17_27
Type: pfam
Location: 31014 - 32243 (+)
Type: pfam
Location: 31014 - 32243 (+)
Gene ID: HRGMv2_2073_17_28
Type: TC
Location: 32346 - 34562 (+)
Type: TC
Location: 32346 - 34562 (+)
Gene ID: HRGMv2_2073_17_29
Type: CAZyme
Location: 34562 - 35386 (+)
Type: CAZyme
Location: 34562 - 35386 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor intestinalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2073_17_29 | vegetarian > vegan | 1.18570 | 0.00566 |