Cluster: HRGMv2_2064_CGC9
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2064
- CGC Family ID: CGCFAM_04280
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2064_3 | HRGMv2_2064_3_73 | 83060 | 84409 | - | 2.A.66.1.28 |
| pfam | HRGMv2_2064_3 | HRGMv2_2064_3_74 | 84390 | 84899 | - | UDG |
| CAZyme | HRGMv2_2064_3 | HRGMv2_2064_3_75 | 85062 | 86537 | - | GH13_18 |
| CAZyme | HRGMv2_2064_3 | HRGMv2_2064_3_76 | 86527 | 89367 | - | GH36 |
| TC | HRGMv2_2064_3 | HRGMv2_2064_3_77 | 89407 | 90243 | - | 3.A.1.1.28 |
| TC | HRGMv2_2064_3 | HRGMv2_2064_3_78 | 90243 | 91118 | - | 3.A.1.1.45 |
| TC | HRGMv2_2064_3 | HRGMv2_2064_3_79 | 91115 | 92416 | - | 3.A.1.1.28 |
| TF | HRGMv2_2064_3 | HRGMv2_2064_3_80 | 92605 | 93447 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_2064_3 | HRGMv2_2064_3_81 | 93450 | 94490 | - | 3.A.1.2.3 |
| STP | HRGMv2_2064_3 | HRGMv2_2064_3_82 | 94506 | 95516 | - | Peripla_BP_1 |
| TC | HRGMv2_2064_3 | HRGMv2_2064_3_83 | 95555 | 97348 | - | 9.B.33.1.1 |
| TF | HRGMv2_2064_3 | HRGMv2_2064_3_84 | 97329 | 98933 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_2064_3 | HRGMv2_2064_3_85 | 99178 | 100827 | - | 3.A.1.2.3 |
| TC | HRGMv2_2064_3 | HRGMv2_2064_3_86 | 100846 | 102354 | - | 3.A.1.2.3 |
Gene ID: HRGMv2_2064_3_73
Type: TC
Location: 83060 - 84409 (-)
Type: TC
Location: 83060 - 84409 (-)
Gene ID: HRGMv2_2064_3_74
Type: pfam
Location: 84390 - 84899 (-)
Type: pfam
Location: 84390 - 84899 (-)
Gene ID: HRGMv2_2064_3_75
Type: CAZyme
Location: 85062 - 86537 (-)
Type: CAZyme
Location: 85062 - 86537 (-)
Gene ID: HRGMv2_2064_3_76
Type: CAZyme
Location: 86527 - 89367 (-)
Type: CAZyme
Location: 86527 - 89367 (-)
Gene ID: HRGMv2_2064_3_77
Type: TC
Location: 89407 - 90243 (-)
Type: TC
Location: 89407 - 90243 (-)
Gene ID: HRGMv2_2064_3_78
Type: TC
Location: 90243 - 91118 (-)
Type: TC
Location: 90243 - 91118 (-)
Gene ID: HRGMv2_2064_3_79
Type: TC
Location: 91115 - 92416 (-)
Type: TC
Location: 91115 - 92416 (-)
Gene ID: HRGMv2_2064_3_80
Type: TF
Location: 92605 - 93447 (+)
Type: TF
Location: 92605 - 93447 (+)
Gene ID: HRGMv2_2064_3_81
Type: TC
Location: 93450 - 94490 (-)
Type: TC
Location: 93450 - 94490 (-)
Gene ID: HRGMv2_2064_3_82
Type: STP
Location: 94506 - 95516 (-)
Type: STP
Location: 94506 - 95516 (-)
Gene ID: HRGMv2_2064_3_83
Type: TC
Location: 95555 - 97348 (-)
Type: TC
Location: 95555 - 97348 (-)
Gene ID: HRGMv2_2064_3_84
Type: TF
Location: 97329 - 98933 (-)
Type: TF
Location: 97329 - 98933 (-)
Gene ID: HRGMv2_2064_3_85
Type: TC
Location: 99178 - 100827 (-)
Type: TC
Location: 99178 - 100827 (-)
Gene ID: HRGMv2_2064_3_86
Type: TC
Location: 100846 - 102354 (-)
Type: TC
Location: 100846 - 102354 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter sp900546625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2064_3_77 | vegan > omnivore | 1.00864 | 0.01057 |
| HRGMv2_2064_3_78 | vegan > omnivore | 1.40338 | 0.01057 |
| HRGMv2_2064_3_79 | vegan > omnivore | 1.34169 | 0.01057 |