Cluster: HRGMv2_2064_CGC33
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2064
- CGC Family ID: CGCFAM_06092
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2064_26 | HRGMv2_2064_26_10 | 9472 | 10827 | + | 2.A.35.2.1 |
| TC | HRGMv2_2064_26 | HRGMv2_2064_26_11 | 10897 | 11517 | + | 2.A.115.2.14 |
| peptidase | HRGMv2_2064_26 | HRGMv2_2064_26_12 | 11600 | 13039 | + | M20.UPC |
| TF | HRGMv2_2064_26 | HRGMv2_2064_26_13 | 13044 | 13925 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_2064_26 | HRGMv2_2064_26_14 | 14117 | 15802 | + | GH13_31 |
| CAZyme | HRGMv2_2064_26 | HRGMv2_2064_26_15 | 15894 | 17519 | + | GH13_31 |
Gene ID: HRGMv2_2064_26_10
Type: TC
Location: 9472 - 10827 (+)
Type: TC
Location: 9472 - 10827 (+)
Gene ID: HRGMv2_2064_26_11
Type: TC
Location: 10897 - 11517 (+)
Type: TC
Location: 10897 - 11517 (+)
Gene ID: HRGMv2_2064_26_12
Type: peptidase
Location: 11600 - 13039 (+)
Type: peptidase
Location: 11600 - 13039 (+)
Gene ID: HRGMv2_2064_26_13
Type: TF
Location: 13044 - 13925 (-)
Type: TF
Location: 13044 - 13925 (-)
Gene ID: HRGMv2_2064_26_14
Type: CAZyme
Location: 14117 - 15802 (+)
Type: CAZyme
Location: 14117 - 15802 (+)
Gene ID: HRGMv2_2064_26_15
Type: CAZyme
Location: 15894 - 17519 (+)
Type: CAZyme
Location: 15894 - 17519 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter sp900546625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.