Cluster: HRGMv2_2064_CGC31
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2064
- CGC Family ID: CGCFAM_00420
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2064_23 | HRGMv2_2064_23_16 | 16265 | 17377 | - | GH172 |
| TC | HRGMv2_2064_23 | HRGMv2_2064_23_17 | 17394 | 18233 | - | 3.A.1.1.11 |
| TC | HRGMv2_2064_23 | HRGMv2_2064_23_18 | 18256 | 19131 | - | 3.A.1.1.41 |
| STP | HRGMv2_2064_23 | HRGMv2_2064_23_19 | 19169 | 20431 | - | SBP_bac_1 |
| TC | HRGMv2_2064_23 | HRGMv2_2064_23_20 | 20623 | 22422 | + | 8.A.59.2.1 |
| TF | HRGMv2_2064_23 | HRGMv2_2064_23_21 | 22422 | 24008 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_2064_23 | HRGMv2_2064_23_22 | 24033 | 25751 | - | CBM34 | GH13_20 |
Gene ID: HRGMv2_2064_23_16
Type: CAZyme
Location: 16265 - 17377 (-)
Type: CAZyme
Location: 16265 - 17377 (-)
Gene ID: HRGMv2_2064_23_17
Type: TC
Location: 17394 - 18233 (-)
Type: TC
Location: 17394 - 18233 (-)
Gene ID: HRGMv2_2064_23_18
Type: TC
Location: 18256 - 19131 (-)
Type: TC
Location: 18256 - 19131 (-)
Gene ID: HRGMv2_2064_23_19
Type: STP
Location: 19169 - 20431 (-)
Type: STP
Location: 19169 - 20431 (-)
Gene ID: HRGMv2_2064_23_20
Type: TC
Location: 20623 - 22422 (+)
Type: TC
Location: 20623 - 22422 (+)
Gene ID: HRGMv2_2064_23_21
Type: TF
Location: 22422 - 24008 (+)
Type: TF
Location: 22422 - 24008 (+)
Gene ID: HRGMv2_2064_23_22
Type: CAZyme
Location: 24033 - 25751 (-)
Type: CAZyme
Location: 24033 - 25751 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter sp900546625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.