Cluster: HRGMv2_2064_CGC28
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2064
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2064_20 | HRGMv2_2064_20_9 | 11749 | 13062 | + | 2.A.86.1.8 |
| STP | HRGMv2_2064_20 | HRGMv2_2064_20_10 | 13072 | 15729 | + | TPR_2 |
| CAZyme | HRGMv2_2064_20 | HRGMv2_2064_20_11 | 15750 | 17705 | + | CBM48 | GH13_9 |
| pfam | HRGMv2_2064_20 | HRGMv2_2064_20_12 | 17885 | 21049 | + | DUF6240 | DUF6240 |
| pfam | HRGMv2_2064_20 | HRGMv2_2064_20_13 | 21006 | 21728 | - | Amidase_3 |
| CAZyme | HRGMv2_2064_20 | HRGMv2_2064_20_14 | 21848 | 23581 | - | GH18 |
Gene ID: HRGMv2_2064_20_9
Type: TC
Location: 11749 - 13062 (+)
Type: TC
Location: 11749 - 13062 (+)
Gene ID: HRGMv2_2064_20_10
Type: STP
Location: 13072 - 15729 (+)
Type: STP
Location: 13072 - 15729 (+)
Gene ID: HRGMv2_2064_20_11
Type: CAZyme
Location: 15750 - 17705 (+)
Type: CAZyme
Location: 15750 - 17705 (+)
Gene ID: HRGMv2_2064_20_12
Type: pfam
Location: 17885 - 21049 (+)
Type: pfam
Location: 17885 - 21049 (+)
Gene ID: HRGMv2_2064_20_13
Type: pfam
Location: 21006 - 21728 (-)
Type: pfam
Location: 21006 - 21728 (-)
Gene ID: HRGMv2_2064_20_14
Type: CAZyme
Location: 21848 - 23581 (-)
Type: CAZyme
Location: 21848 - 23581 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter sp900546625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.