Cluster: HRGMv2_2064_CGC27
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2064
- CGC Family ID: CGCFAM_04034
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2064_19 | HRGMv2_2064_19_18 | 14892 | 15593 | - | 3.A.1.132.6 |
| TF | HRGMv2_2064_19 | HRGMv2_2064_19_19 | 15599 | 15976 | - | GntR |
| TC | HRGMv2_2064_19 | HRGMv2_2064_19_20 | 16252 | 17019 | + | 3.A.1.134.4 |
| TC | HRGMv2_2064_19 | HRGMv2_2064_19_21 | 17012 | 19051 | + | 3.A.1.134.9 |
| pfam | HRGMv2_2064_19 | HRGMv2_2064_19_22 | 19133 | 20344 | + | tRNA_SAD |
| pfam | HRGMv2_2064_19 | HRGMv2_2064_19_23 | 20414 | 21754 | - | AcetylCoA_hydro | AcetylCoA_hyd_C |
| CAZyme | HRGMv2_2064_19 | HRGMv2_2064_19_24 | 21899 | 22990 | - | GT2 |
Gene ID: HRGMv2_2064_19_18
Type: TC
Location: 14892 - 15593 (-)
Type: TC
Location: 14892 - 15593 (-)
Gene ID: HRGMv2_2064_19_19
Type: TF
Location: 15599 - 15976 (-)
Type: TF
Location: 15599 - 15976 (-)
Gene ID: HRGMv2_2064_19_20
Type: TC
Location: 16252 - 17019 (+)
Type: TC
Location: 16252 - 17019 (+)
Gene ID: HRGMv2_2064_19_21
Type: TC
Location: 17012 - 19051 (+)
Type: TC
Location: 17012 - 19051 (+)
Gene ID: HRGMv2_2064_19_22
Type: pfam
Location: 19133 - 20344 (+)
Type: pfam
Location: 19133 - 20344 (+)
Gene ID: HRGMv2_2064_19_23
Type: pfam
Location: 20414 - 21754 (-)
Type: pfam
Location: 20414 - 21754 (-)
Gene ID: HRGMv2_2064_19_24
Type: CAZyme
Location: 21899 - 22990 (-)
Type: CAZyme
Location: 21899 - 22990 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter sp900546625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.