Cluster: HRGMv2_2064_CGC23
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2064
- CGC Family ID: CGCFAM_00049
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2064_9 | HRGMv2_2064_9_77 | 86995 | 87822 | - | GT2 |
| TC | HRGMv2_2064_9 | HRGMv2_2064_9_78 | 87849 | 88538 | - | 9.B.18.1.3 |
| STP | HRGMv2_2064_9 | HRGMv2_2064_9_79 | 88531 | 89748 | - | Aminotran_1_2 |
| TC | HRGMv2_2064_9 | HRGMv2_2064_9_80 | 89828 | 91774 | - | 9.B.18.2.1 |
| pfam | HRGMv2_2064_9 | HRGMv2_2064_9_81 | 91925 | 92344 | - | GtrA_DPMS_TM |
| TC | HRGMv2_2064_9 | HRGMv2_2064_9_82 | 92476 | 93942 | + | 2.A.66.2.16 |
Gene ID: HRGMv2_2064_9_77
Type: CAZyme
Location: 86995 - 87822 (-)
Type: CAZyme
Location: 86995 - 87822 (-)
Gene ID: HRGMv2_2064_9_78
Type: TC
Location: 87849 - 88538 (-)
Type: TC
Location: 87849 - 88538 (-)
Gene ID: HRGMv2_2064_9_79
Type: STP
Location: 88531 - 89748 (-)
Type: STP
Location: 88531 - 89748 (-)
Gene ID: HRGMv2_2064_9_80
Type: TC
Location: 89828 - 91774 (-)
Type: TC
Location: 89828 - 91774 (-)
Gene ID: HRGMv2_2064_9_81
Type: pfam
Location: 91925 - 92344 (-)
Type: pfam
Location: 91925 - 92344 (-)
Gene ID: HRGMv2_2064_9_82
Type: TC
Location: 92476 - 93942 (+)
Type: TC
Location: 92476 - 93942 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter sp900546625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2064_9_77 | vegetarian > vegan | 1.43932 | 0.00603 |
| HRGMv2_2064_9_78 | vegetarian > vegan | 1.71667 | 0.00603 |
| HRGMv2_2064_9_79 | vegetarian > vegan | 2.72808 | 0.00603 |
| HRGMv2_2064_9_80 | vegetarian > vegan | 1.42411 | 0.00603 |
| HRGMv2_2064_9_81 | vegetarian > vegan | 2.13212 | 0.00603 |
| HRGMv2_2064_9_82 | vegetarian > vegan | 1.61717 | 0.00603 |