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Cluster: HRGMv2_2064_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2064_5 HRGMv2_2064_5_129 144726 146630 + 3.A.1.120.6
TC HRGMv2_2064_5 HRGMv2_2064_5_130 146648 147109 - 2.A.79.1.7
TC HRGMv2_2064_5 HRGMv2_2064_5_131 147113 147880 - 2.A.79.1.5
TC HRGMv2_2064_5 HRGMv2_2064_5_132 148280 148909 + 9.A.11.1.1
pfam HRGMv2_2064_5 HRGMv2_2064_5_133 148902 149378 + SpoVAB
pfam HRGMv2_2064_5 HRGMv2_2064_5_134 149476 149802 + DUF3837
CAZyme HRGMv2_2064_5 HRGMv2_2064_5_135 149871 152324 - GH94
TF HRGMv2_2064_5 HRGMv2_2064_5_136 152705 153715 + LacI
NULL(UNKNOWN) HRGMv2_2064_5 HRGMv2_2064_5_137 153785 155179 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2064_5 HRGMv2_2064_5_138 155331 156248 + 3.A.1.1.4
TC HRGMv2_2064_5 HRGMv2_2064_5_139 156255 157118 + 3.A.1.1.26
Gene ID: HRGMv2_2064_5_129
Type: TC
Location: 144726 - 146630 (+)
Gene ID: HRGMv2_2064_5_130
Type: TC
Location: 146648 - 147109 (-)
Gene ID: HRGMv2_2064_5_131
Type: TC
Location: 147113 - 147880 (-)
Gene ID: HRGMv2_2064_5_132
Type: TC
Location: 148280 - 148909 (+)
Gene ID: HRGMv2_2064_5_133
Type: pfam
Location: 148902 - 149378 (+)
Gene ID: HRGMv2_2064_5_134
Type: pfam
Location: 149476 - 149802 (+)
Gene ID: HRGMv2_2064_5_135
Type: CAZyme
Location: 149871 - 152324 (-)
Gene ID: HRGMv2_2064_5_136
Type: TF
Location: 152705 - 153715 (+)
Gene ID: HRGMv2_2064_5_137
Type:
Location: 153785 - 155179 (+)
Gene ID: HRGMv2_2064_5_138
Type: TC
Location: 155331 - 156248 (+)
Gene ID: HRGMv2_2064_5_139
Type: TC
Location: 156255 - 157118 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2064_5_137 vegan > omnivore 1.13563 0.01057

🧭 Explore Read Mapping of CGC

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