Cluster: HRGMv2_2064_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2064
- CGC Family ID: CGCFAM_09944
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2064_1 | HRGMv2_2064_1_12 | 9806 | 10933 | - | GT28 |
| pfam | HRGMv2_2064_1 | HRGMv2_2064_1_13 | 11107 | 12051 | + | Mem_trans |
| TC | HRGMv2_2064_1 | HRGMv2_2064_1_14 | 12226 | 14292 | + | 4.A.3.2.8 |
| TC | HRGMv2_2064_1 | HRGMv2_2064_1_15 | 14411 | 15217 | + | 3.A.1.3.10 |
| TC | HRGMv2_2064_1 | HRGMv2_2064_1_16 | 15219 | 15875 | + | 3.A.1.3.14 |
| TC | HRGMv2_2064_1 | HRGMv2_2064_1_17 | 15885 | 16670 | + | 3.A.1.3.14 |
Gene ID: HRGMv2_2064_1_12
Type: CAZyme
Location: 9806 - 10933 (-)
Type: CAZyme
Location: 9806 - 10933 (-)
Gene ID: HRGMv2_2064_1_13
Type: pfam
Location: 11107 - 12051 (+)
Type: pfam
Location: 11107 - 12051 (+)
Gene ID: HRGMv2_2064_1_14
Type: TC
Location: 12226 - 14292 (+)
Type: TC
Location: 12226 - 14292 (+)
Gene ID: HRGMv2_2064_1_15
Type: TC
Location: 14411 - 15217 (+)
Type: TC
Location: 14411 - 15217 (+)
Gene ID: HRGMv2_2064_1_16
Type: TC
Location: 15219 - 15875 (+)
Type: TC
Location: 15219 - 15875 (+)
Gene ID: HRGMv2_2064_1_17
Type: TC
Location: 15885 - 16670 (+)
Type: TC
Location: 15885 - 16670 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter sp900546625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2064_1_16 | vegetarian > vegan | 1.01417 | 0.00603 |