Cluster: HRGMv2_2055_CGC45

🧬 Cluster Details

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_2055_49	HRGMv2_2055_49_55	66271	66534	+	8.A.8.1.6
NULL(UNKNOWN)	HRGMv2_2055_49	HRGMv2_2055_49_56	66518	67903	+	NULL(UNKNOWN) [View Structural Homologs]
CAZyme	HRGMv2_2055_49	HRGMv2_2055_49_57	67984	68904	+	GT2
pfam	HRGMv2_2055_49	HRGMv2_2055_49_58	68941	69498	+	dTDP_sugar_isom
pfam	HRGMv2_2055_49	HRGMv2_2055_49_59	69528	70556	+	ABC2_membrane
TC	HRGMv2_2055_49	HRGMv2_2055_49_60	70640	71377	+	3.A.1.103.1
CAZyme	HRGMv2_2055_49	HRGMv2_2055_49_61	71416	73548	+	GT2 \| GT2
CAZyme	HRGMv2_2055_49	HRGMv2_2055_49_62	73582	75741	+	GT2 \| GT2
CAZyme	HRGMv2_2055_49	HRGMv2_2055_49_63	75767	76744	+	GT2
TC	HRGMv2_2055_49	HRGMv2_2055_49_64	76899	78314	+	9.B.18.1.1
pfam	HRGMv2_2055_49	HRGMv2_2055_49_65	78365	79666	+	LytR_cpsA_psr
peptidase	HRGMv2_2055_49	HRGMv2_2055_49_66	79849	81270	+	S01.UPC
CAZyme	HRGMv2_2055_49	HRGMv2_2055_49_67	81474	82115	+	CE4

Gene ID: HRGMv2_2055_49_55
Type: TC
Location: 66271 - 66534 (+)

Gene ID: HRGMv2_2055_49_56
Type:
Location: 66518 - 67903 (+)

Gene ID: HRGMv2_2055_49_57
Type: CAZyme
Location: 67984 - 68904 (+)

Gene ID: HRGMv2_2055_49_58
Type: pfam
Location: 68941 - 69498 (+)

Gene ID: HRGMv2_2055_49_59
Type: pfam
Location: 69528 - 70556 (+)

Gene ID: HRGMv2_2055_49_60
Type: TC
Location: 70640 - 71377 (+)

Gene ID: HRGMv2_2055_49_61
Type: CAZyme
Location: 71416 - 73548 (+)

Gene ID: HRGMv2_2055_49_62
Type: CAZyme
Location: 73582 - 75741 (+)

Gene ID: HRGMv2_2055_49_63
Type: CAZyme
Location: 75767 - 76744 (+)

Gene ID: HRGMv2_2055_49_64
Type: TC
Location: 76899 - 78314 (+)

Gene ID: HRGMv2_2055_49_65
Type: pfam
Location: 78365 - 79666 (+)

Gene ID: HRGMv2_2055_49_66
Type: peptidase
Location: 79849 - 81270 (+)

Gene ID: HRGMv2_2055_49_67
Type: CAZyme
Location: 81474 - 82115 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_2055_49_56	vegan > omnivore	1.05846	0.00701
HRGMv2_2055_49_56	vegetarian > omnivore	1.04231	0.01089
HRGMv2_2055_49_60	vegan > omnivore	1.19258	0.00701
HRGMv2_2055_49_64	vegan > omnivore	1.14697	0.00701
HRGMv2_2055_49_67	vegan > omnivore	1.19183	0.00701