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Cluster: HRGMv2_2054_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2054_2 HRGMv2_2054_2_39 43719 45638 - GT2
CAZyme HRGMv2_2054_2 HRGMv2_2054_2_40 45657 46745 - GH5_2
pfam HRGMv2_2054_2 HRGMv2_2054_2_41 46942 50187 - Big_2 | Shr-like_HID | Shr-like_HID | Shr-like_HID | Shr-like_HID
TF HRGMv2_2054_2 HRGMv2_2054_2_42 50492 50932 + MarR
TC HRGMv2_2054_2 HRGMv2_2054_2_43 50929 51606 + 2.A.115.2.8
NULL(UNKNOWN) HRGMv2_2054_2 HRGMv2_2054_2_44 52414 53319 - NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_2054_2 HRGMv2_2054_2_45 53726 54559 - HTH_1
TC HRGMv2_2054_2 HRGMv2_2054_2_46 54687 56036 + 2.A.66.1.32
TC HRGMv2_2054_2 HRGMv2_2054_2_47 56192 57262 - 3.A.15.2.1
TC HRGMv2_2054_2 HRGMv2_2054_2_48 57298 58977 - 3.A.15.4.1
NULL(UNKNOWN) HRGMv2_2054_2 HRGMv2_2054_2_49 58961 59701 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_2054_2 HRGMv2_2054_2_50 59698 61152 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2054_2 HRGMv2_2054_2_51 61237 62430 - 3.A.11.1.3
TC HRGMv2_2054_2 HRGMv2_2054_2_52 62519 63301 - 3.A.11.1.3
Gene ID: HRGMv2_2054_2_39
Type: CAZyme
Location: 43719 - 45638 (-)
Gene ID: HRGMv2_2054_2_40
Type: CAZyme
Location: 45657 - 46745 (-)
Gene ID: HRGMv2_2054_2_41
Type: pfam
Location: 46942 - 50187 (-)
Gene ID: HRGMv2_2054_2_42
Type: TF
Location: 50492 - 50932 (+)
Gene ID: HRGMv2_2054_2_43
Type: TC
Location: 50929 - 51606 (+)
Gene ID: HRGMv2_2054_2_44
Type:
Location: 52414 - 53319 (-)
Gene ID: HRGMv2_2054_2_45
Type: TF
Location: 53726 - 54559 (-)
Gene ID: HRGMv2_2054_2_46
Type: TC
Location: 54687 - 56036 (+)
Gene ID: HRGMv2_2054_2_47
Type: TC
Location: 56192 - 57262 (-)
Gene ID: HRGMv2_2054_2_48
Type: TC
Location: 57298 - 58977 (-)
Gene ID: HRGMv2_2054_2_49
Type:
Location: 58961 - 59701 (-)
Gene ID: HRGMv2_2054_2_50
Type:
Location: 59698 - 61152 (-)
Gene ID: HRGMv2_2054_2_51
Type: TC
Location: 61237 - 62430 (-)
Gene ID: HRGMv2_2054_2_52
Type: TC
Location: 62519 - 63301 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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