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Cluster: HRGMv2_2046_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2046_2 HRGMv2_2046_2_51 51425 53323 - GH20
TC HRGMv2_2046_2 HRGMv2_2046_2_52 53499 55055 + 3.A.1.121.4
pfam HRGMv2_2046_2 HRGMv2_2046_2_53 55072 56130 + Big_2 | Big_2
pfam HRGMv2_2046_2 HRGMv2_2046_2_54 56382 57425 + tRNA-synt_1b
TC HRGMv2_2046_2 HRGMv2_2046_2_55 57474 58574 - 3.A.1.2.3
STP HRGMv2_2046_2 HRGMv2_2046_2_56 58585 59556 - Peripla_BP_1
TC HRGMv2_2046_2 HRGMv2_2046_2_57 59553 61403 - 9.B.33.1.1
TF HRGMv2_2046_2 HRGMv2_2046_2_58 61396 63006 - HTH_AraC | HTH_AraC
NULL(UNKNOWN) HRGMv2_2046_2 HRGMv2_2046_2_59 63022 63333 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2046_2 HRGMv2_2046_2_60 63419 64405 - 3.A.1.2.3
TC HRGMv2_2046_2 HRGMv2_2046_2_61 64424 65932 - 3.A.1.2.3
TC HRGMv2_2046_2 HRGMv2_2046_2_62 66091 67224 - 3.A.1.2.3
NULL(UNKNOWN) HRGMv2_2046_2 HRGMv2_2046_2_63 67439 69016 - NULL(UNKNOWN)
[View Structural Homologs]
peptidase HRGMv2_2046_2 HRGMv2_2046_2_64 69035 70348 - M17.UPW
CAZyme HRGMv2_2046_2 HRGMv2_2046_2_65 70361 73474 - GH38
CAZyme HRGMv2_2046_2 HRGMv2_2046_2_66 73508 74866 - GH4
STP HRGMv2_2046_2 HRGMv2_2046_2_67 74895 75833 - PfkB
TC HRGMv2_2046_2 HRGMv2_2046_2_68 75992 76894 - 3.A.1.1.29
STP HRGMv2_2046_2 HRGMv2_2046_2_69 76978 78690 - SBP_bac_1
TC HRGMv2_2046_2 HRGMv2_2046_2_70 78735 79688 - 3.A.1.1.10
Gene ID: HRGMv2_2046_2_51
Type: CAZyme
Location: 51425 - 53323 (-)
Gene ID: HRGMv2_2046_2_52
Type: TC
Location: 53499 - 55055 (+)
Gene ID: HRGMv2_2046_2_53
Type: pfam
Location: 55072 - 56130 (+)
Gene ID: HRGMv2_2046_2_54
Type: pfam
Location: 56382 - 57425 (+)
Gene ID: HRGMv2_2046_2_55
Type: TC
Location: 57474 - 58574 (-)
Gene ID: HRGMv2_2046_2_56
Type: STP
Location: 58585 - 59556 (-)
Gene ID: HRGMv2_2046_2_57
Type: TC
Location: 59553 - 61403 (-)
Gene ID: HRGMv2_2046_2_58
Type: TF
Location: 61396 - 63006 (-)
Gene ID: HRGMv2_2046_2_59
Type:
Location: 63022 - 63333 (-)
Gene ID: HRGMv2_2046_2_60
Type: TC
Location: 63419 - 64405 (-)
Gene ID: HRGMv2_2046_2_61
Type: TC
Location: 64424 - 65932 (-)
Gene ID: HRGMv2_2046_2_62
Type: TC
Location: 66091 - 67224 (-)
Gene ID: HRGMv2_2046_2_63
Type:
Location: 67439 - 69016 (-)
Gene ID: HRGMv2_2046_2_64
Type: peptidase
Location: 69035 - 70348 (-)
Gene ID: HRGMv2_2046_2_65
Type: CAZyme
Location: 70361 - 73474 (-)
Gene ID: HRGMv2_2046_2_66
Type: CAZyme
Location: 73508 - 74866 (-)
Gene ID: HRGMv2_2046_2_67
Type: STP
Location: 74895 - 75833 (-)
Gene ID: HRGMv2_2046_2_68
Type: TC
Location: 75992 - 76894 (-)
Gene ID: HRGMv2_2046_2_69
Type: STP
Location: 76978 - 78690 (-)
Gene ID: HRGMv2_2046_2_70
Type: TC
Location: 78735 - 79688 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2046_2_60 vegetarian > omnivore 1.18557 0.00289
HRGMv2_2046_2_68 vegan > omnivore 1.38391 0.01137
HRGMv2_2046_2_69 vegan > omnivore 1.49037 0.02231
HRGMv2_2046_2_70 vegan > omnivore 1.20561 0.02231

🧭 Explore Read Mapping of CGC

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