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Cluster: HRGMv2_2046_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2046_1 HRGMv2_2046_1_148 163878 164810 + 3.A.1.1.10
TC HRGMv2_2046_1 HRGMv2_2046_1_149 164831 165769 + 3.A.1.1.10
CAZyme HRGMv2_2046_1 HRGMv2_2046_1_150 165840 168158 + CBM67 | GH78
TF HRGMv2_2046_1 HRGMv2_2046_1_151 168234 169436 - HTH_11
CAZyme HRGMv2_2046_1 HRGMv2_2046_1_152 169740 172055 + GH2
TC HRGMv2_2046_1 HRGMv2_2046_1_153 172066 173031 + 3.A.1.1.10
TC HRGMv2_2046_1 HRGMv2_2046_1_154 173040 173957 + 3.A.1.1.29
Gene ID: HRGMv2_2046_1_148
Type: TC
Location: 163878 - 164810 (+)
Gene ID: HRGMv2_2046_1_149
Type: TC
Location: 164831 - 165769 (+)
Gene ID: HRGMv2_2046_1_150
Type: CAZyme
Location: 165840 - 168158 (+)
Gene ID: HRGMv2_2046_1_151
Type: TF
Location: 168234 - 169436 (-)
Gene ID: HRGMv2_2046_1_152
Type: CAZyme
Location: 169740 - 172055 (+)
Gene ID: HRGMv2_2046_1_153
Type: TC
Location: 172066 - 173031 (+)
Gene ID: HRGMv2_2046_1_154
Type: TC
Location: 173040 - 173957 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2046_1_148 vegan > omnivore 1.31718 0.01886
HRGMv2_2046_1_149 vegan > omnivore 1.20260 0.02864
HRGMv2_2046_1_149 vegetarian > omnivore 1.78526 0.03095
HRGMv2_2046_1_151 vegetarian > omnivore 1.05640 0.04444

🧭 Explore Read Mapping of CGC

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