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Cluster: HRGMv2_2046_CGC59

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2046_62 HRGMv2_2046_62_2 1759 2658 - 3.A.1.1.29
TC HRGMv2_2046_62 HRGMv2_2046_62_3 2671 3609 - 3.A.1.1.10
TF HRGMv2_2046_62 HRGMv2_2046_62_4 3881 5995 + HTH_AraC
STP HRGMv2_2046_62 HRGMv2_2046_62_5 6135 6629 - Nitroreductase | Nitroreductase
TC HRGMv2_2046_62 HRGMv2_2046_62_6 7142 7888 + 2.A.88.8.7
pfam HRGMv2_2046_62 HRGMv2_2046_62_7 7907 8563 + adh_short | Epimerase | adh_short_C2
NULL(UNKNOWN) HRGMv2_2046_62 HRGMv2_2046_62_8 8826 9056 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2046_62 HRGMv2_2046_62_9 9370 10719 - 2.A.66.1.28
peptidase HRGMv2_2046_62 HRGMv2_2046_62_10 10917 11165 - M28.UPF
pfam HRGMv2_2046_62 HRGMv2_2046_62_11 11363 12733 + MatE | MatE
CAZyme HRGMv2_2046_62 HRGMv2_2046_62_12 13047 14714 + GH13_31
Gene ID: HRGMv2_2046_62_2
Type: TC
Location: 1759 - 2658 (-)
Gene ID: HRGMv2_2046_62_3
Type: TC
Location: 2671 - 3609 (-)
Gene ID: HRGMv2_2046_62_4
Type: TF
Location: 3881 - 5995 (+)
Gene ID: HRGMv2_2046_62_5
Type: STP
Location: 6135 - 6629 (-)
Gene ID: HRGMv2_2046_62_6
Type: TC
Location: 7142 - 7888 (+)
Gene ID: HRGMv2_2046_62_7
Type: pfam
Location: 7907 - 8563 (+)
Gene ID: HRGMv2_2046_62_8
Type:
Location: 8826 - 9056 (-)
Gene ID: HRGMv2_2046_62_9
Type: TC
Location: 9370 - 10719 (-)
Gene ID: HRGMv2_2046_62_10
Type: peptidase
Location: 10917 - 11165 (-)
Gene ID: HRGMv2_2046_62_11
Type: pfam
Location: 11363 - 12733 (+)
Gene ID: HRGMv2_2046_62_12
Type: CAZyme
Location: 13047 - 14714 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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