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Cluster: HRGMv2_2046_CGC53

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2046_51 HRGMv2_2046_51_4 3443 4765 + GH4
TC HRGMv2_2046_51 HRGMv2_2046_51_5 4901 6652 + 8.A.59.2.1
TF HRGMv2_2046_51 HRGMv2_2046_51_6 6649 8139 + HTH_AraC | HTH_AraC
STP HRGMv2_2046_51 HRGMv2_2046_51_7 8313 9554 + SBP_bac_1
TC HRGMv2_2046_51 HRGMv2_2046_51_8 9793 10689 + 3.A.1.1.37
TC HRGMv2_2046_51 HRGMv2_2046_51_9 10702 11580 + 3.A.1.1.34
CAZyme HRGMv2_2046_51 HRGMv2_2046_51_10 11594 13786 + CBM67 | GH78
TC HRGMv2_2046_51 HRGMv2_2046_51_11 13857 14765 - 3.A.1.1.29
TC HRGMv2_2046_51 HRGMv2_2046_51_12 14783 15709 - 3.A.1.1.10
TC HRGMv2_2046_51 HRGMv2_2046_51_13 15819 17339 - 3.A.1.1.10
Gene ID: HRGMv2_2046_51_4
Type: CAZyme
Location: 3443 - 4765 (+)
Gene ID: HRGMv2_2046_51_5
Type: TC
Location: 4901 - 6652 (+)
Gene ID: HRGMv2_2046_51_6
Type: TF
Location: 6649 - 8139 (+)
Gene ID: HRGMv2_2046_51_7
Type: STP
Location: 8313 - 9554 (+)
Gene ID: HRGMv2_2046_51_8
Type: TC
Location: 9793 - 10689 (+)
Gene ID: HRGMv2_2046_51_9
Type: TC
Location: 10702 - 11580 (+)
Gene ID: HRGMv2_2046_51_10
Type: CAZyme
Location: 11594 - 13786 (+)
Gene ID: HRGMv2_2046_51_11
Type: TC
Location: 13857 - 14765 (-)
Gene ID: HRGMv2_2046_51_12
Type: TC
Location: 14783 - 15709 (-)
Gene ID: HRGMv2_2046_51_13
Type: TC
Location: 15819 - 17339 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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