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Cluster: HRGMv2_2046_CGC52

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2046_49 HRGMv2_2046_49_12 12522 14390 + 1.A.33.1.4
pfam HRGMv2_2046_49 HRGMv2_2046_49_13 14527 15747 + DnaJ | DnaJ_CXXCXGXG | DnaJ_C
TC HRGMv2_2046_49 HRGMv2_2046_49_14 15849 17609 + 8.A.59.2.1
TF HRGMv2_2046_49 HRGMv2_2046_49_15 17584 19188 + HTH_AraC | HTH_AraC
STP HRGMv2_2046_49 HRGMv2_2046_49_16 19284 20954 + SBP_bac_1
TC HRGMv2_2046_49 HRGMv2_2046_49_17 21055 21993 + 3.A.1.1.9
TC HRGMv2_2046_49 HRGMv2_2046_49_18 22008 22901 + 3.A.1.1.9
CAZyme HRGMv2_2046_49 HRGMv2_2046_49_19 22905 25520 + CBM67 | GH78
Gene ID: HRGMv2_2046_49_12
Type: TC
Location: 12522 - 14390 (+)
Gene ID: HRGMv2_2046_49_13
Type: pfam
Location: 14527 - 15747 (+)
Gene ID: HRGMv2_2046_49_14
Type: TC
Location: 15849 - 17609 (+)
Gene ID: HRGMv2_2046_49_15
Type: TF
Location: 17584 - 19188 (+)
Gene ID: HRGMv2_2046_49_16
Type: STP
Location: 19284 - 20954 (+)
Gene ID: HRGMv2_2046_49_17
Type: TC
Location: 21055 - 21993 (+)
Gene ID: HRGMv2_2046_49_18
Type: TC
Location: 22008 - 22901 (+)
Gene ID: HRGMv2_2046_49_19
Type: CAZyme
Location: 22905 - 25520 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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