Cluster: HRGMv2_2046_CGC51
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2046
- CGC Family ID: CGCFAM_02572
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2046_48 | HRGMv2_2046_48_2 | 1761 | 3746 | - | GH120 |
| CAZyme | HRGMv2_2046_48 | HRGMv2_2046_48_3 | 3787 | 5997 | - | GH3 |
| CAZyme | HRGMv2_2046_48 | HRGMv2_2046_48_4 | 6013 | 8661 | - | GH106 |
| TC | HRGMv2_2046_48 | HRGMv2_2046_48_5 | 8689 | 9579 | - | 3.A.1.1.29 |
| TC | HRGMv2_2046_48 | HRGMv2_2046_48_6 | 9594 | 10535 | - | 3.A.1.1.25 |
Gene ID: HRGMv2_2046_48_2
Type: CAZyme
Location: 1761 - 3746 (-)
Type: CAZyme
Location: 1761 - 3746 (-)
Gene ID: HRGMv2_2046_48_3
Type: CAZyme
Location: 3787 - 5997 (-)
Type: CAZyme
Location: 3787 - 5997 (-)
Gene ID: HRGMv2_2046_48_4
Type: CAZyme
Location: 6013 - 8661 (-)
Type: CAZyme
Location: 6013 - 8661 (-)
Gene ID: HRGMv2_2046_48_5
Type: TC
Location: 8689 - 9579 (-)
Type: TC
Location: 8689 - 9579 (-)
Gene ID: HRGMv2_2046_48_6
Type: TC
Location: 9594 - 10535 (-)
Type: TC
Location: 9594 - 10535 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Limivivens
Species
Limivivens faecihominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2046_48_2 | vegan > omnivore | 1.29990 | 0.02864 |
| HRGMv2_2046_48_4 | vegan > omnivore | 1.35873 | 0.01886 |