Cluster: HRGMv2_2046_CGC45
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2046
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2046_34 | HRGMv2_2046_34_2 | 1391 | 3070 | + | 9.B.33.1.1 |
| STP | HRGMv2_2046_34 | HRGMv2_2046_34_3 | 3067 | 4650 | + | SBP_bac_1 |
| TF | HRGMv2_2046_34 | HRGMv2_2046_34_4 | 4654 | 6168 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_2046_34 | HRGMv2_2046_34_5 | 6357 | 7925 | + | 3.A.1.1.29 |
| CAZyme | HRGMv2_2046_34 | HRGMv2_2046_34_6 | 8045 | 9970 | + | GH27 |
| TC | HRGMv2_2046_34 | HRGMv2_2046_34_7 | 9994 | 10944 | + | 3.A.1.1.29 |
| TC | HRGMv2_2046_34 | HRGMv2_2046_34_8 | 10957 | 11856 | + | 3.A.1.1.29 |
Gene ID: HRGMv2_2046_34_2
Type: TC
Location: 1391 - 3070 (+)
Type: TC
Location: 1391 - 3070 (+)
Gene ID: HRGMv2_2046_34_3
Type: STP
Location: 3067 - 4650 (+)
Type: STP
Location: 3067 - 4650 (+)
Gene ID: HRGMv2_2046_34_4
Type: TF
Location: 4654 - 6168 (+)
Type: TF
Location: 4654 - 6168 (+)
Gene ID: HRGMv2_2046_34_5
Type: TC
Location: 6357 - 7925 (+)
Type: TC
Location: 6357 - 7925 (+)
Gene ID: HRGMv2_2046_34_6
Type: CAZyme
Location: 8045 - 9970 (+)
Type: CAZyme
Location: 8045 - 9970 (+)
Gene ID: HRGMv2_2046_34_7
Type: TC
Location: 9994 - 10944 (+)
Type: TC
Location: 9994 - 10944 (+)
Gene ID: HRGMv2_2046_34_8
Type: TC
Location: 10957 - 11856 (+)
Type: TC
Location: 10957 - 11856 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Limivivens
Species
Limivivens faecihominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.