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Cluster: HRGMv2_2046_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2046_29 HRGMv2_2046_29_20 22066 23889 - GT2
TC HRGMv2_2046_29 HRGMv2_2046_29_21 23921 24703 - 3.A.1.103.5
TC HRGMv2_2046_29 HRGMv2_2046_29_22 24716 25486 - 3.A.1.103.4
CAZyme HRGMv2_2046_29 HRGMv2_2046_29_23 25510 26514 - GT2
CAZyme HRGMv2_2046_29 HRGMv2_2046_29_24 26654 27910 - GT2
CAZyme HRGMv2_2046_29 HRGMv2_2046_29_25 27929 28717 - GT2
TC HRGMv2_2046_29 HRGMv2_2046_29_26 28663 30051 - 9.B.18.1.3
Gene ID: HRGMv2_2046_29_20
Type: CAZyme
Location: 22066 - 23889 (-)
Gene ID: HRGMv2_2046_29_21
Type: TC
Location: 23921 - 24703 (-)
Gene ID: HRGMv2_2046_29_22
Type: TC
Location: 24716 - 25486 (-)
Gene ID: HRGMv2_2046_29_23
Type: CAZyme
Location: 25510 - 26514 (-)
Gene ID: HRGMv2_2046_29_24
Type: CAZyme
Location: 26654 - 27910 (-)
Gene ID: HRGMv2_2046_29_25
Type: CAZyme
Location: 27929 - 28717 (-)
Gene ID: HRGMv2_2046_29_26
Type: TC
Location: 28663 - 30051 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2046_29_25 vegan > omnivore 1.57168 0.02864

🧭 Explore Read Mapping of CGC

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