Cluster: HRGMv2_2046_CGC40
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2046
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2046_28 | HRGMv2_2046_28_23 | 23716 | 26751 | - | GH2 |
| TC | HRGMv2_2046_28 | HRGMv2_2046_28_24 | 26824 | 27630 | - | 3.A.1.1.4 |
| TC | HRGMv2_2046_28 | HRGMv2_2046_28_25 | 27627 | 28508 | - | 3.A.1.1.4 |
| TC | HRGMv2_2046_28 | HRGMv2_2046_28_26 | 28625 | 29911 | - | 3.A.1.1.4 |
Gene ID: HRGMv2_2046_28_23
Type: CAZyme
Location: 23716 - 26751 (-)
Type: CAZyme
Location: 23716 - 26751 (-)
Gene ID: HRGMv2_2046_28_24
Type: TC
Location: 26824 - 27630 (-)
Type: TC
Location: 26824 - 27630 (-)
Gene ID: HRGMv2_2046_28_25
Type: TC
Location: 27627 - 28508 (-)
Type: TC
Location: 27627 - 28508 (-)
Gene ID: HRGMv2_2046_28_26
Type: TC
Location: 28625 - 29911 (-)
Type: TC
Location: 28625 - 29911 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Limivivens
Species
Limivivens faecihominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2046_28_25 | vegan > omnivore | 1.17688 | 0.02864 |