Cluster: HRGMv2_2046_CGC39
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2046
- CGC Family ID: CGCFAM_08099
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2046_27 | HRGMv2_2046_27_2 | 1709 | 2593 | - | 3.A.1.1.29 |
| TC | HRGMv2_2046_27 | HRGMv2_2046_27_3 | 2607 | 3527 | - | 3.A.1.1.9 |
| TF | HRGMv2_2046_27 | HRGMv2_2046_27_4 | 3658 | 4437 | - | HTH_AraC | HTH_AraC |
| STP | HRGMv2_2046_27 | HRGMv2_2046_27_5 | 4418 | 6082 | - | HATPase_c |
| CAZyme | HRGMv2_2046_27 | HRGMv2_2046_27_6 | 6079 | 8715 | - | CBM67 | GH78 |
| CAZyme | HRGMv2_2046_27 | HRGMv2_2046_27_7 | 8968 | 12153 | + | GH106 |
Gene ID: HRGMv2_2046_27_2
Type: TC
Location: 1709 - 2593 (-)
Type: TC
Location: 1709 - 2593 (-)
Gene ID: HRGMv2_2046_27_3
Type: TC
Location: 2607 - 3527 (-)
Type: TC
Location: 2607 - 3527 (-)
Gene ID: HRGMv2_2046_27_4
Type: TF
Location: 3658 - 4437 (-)
Type: TF
Location: 3658 - 4437 (-)
Gene ID: HRGMv2_2046_27_5
Type: STP
Location: 4418 - 6082 (-)
Type: STP
Location: 4418 - 6082 (-)
Gene ID: HRGMv2_2046_27_6
Type: CAZyme
Location: 6079 - 8715 (-)
Type: CAZyme
Location: 6079 - 8715 (-)
Gene ID: HRGMv2_2046_27_7
Type: CAZyme
Location: 8968 - 12153 (+)
Type: CAZyme
Location: 8968 - 12153 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Limivivens
Species
Limivivens faecihominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.