Cluster: HRGMv2_2046_CGC38
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2046
- CGC Family ID: CGCFAM_00653
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2046_25 | HRGMv2_2046_25_9 | 15707 | 16645 | + | 3.A.1.1.10 |
| TC | HRGMv2_2046_25 | HRGMv2_2046_25_10 | 16659 | 17585 | + | 3.A.1.1.29 |
| CAZyme | HRGMv2_2046_25 | HRGMv2_2046_25_11 | 17770 | 19443 | + | GH110 |
| CAZyme | HRGMv2_2046_25 | HRGMv2_2046_25_12 | 19549 | 20751 | + | GH109 |
| CAZyme | HRGMv2_2046_25 | HRGMv2_2046_25_13 | 20764 | 23718 | + | GH2 |
Gene ID: HRGMv2_2046_25_9
Type: TC
Location: 15707 - 16645 (+)
Type: TC
Location: 15707 - 16645 (+)
Gene ID: HRGMv2_2046_25_10
Type: TC
Location: 16659 - 17585 (+)
Type: TC
Location: 16659 - 17585 (+)
Gene ID: HRGMv2_2046_25_11
Type: CAZyme
Location: 17770 - 19443 (+)
Type: CAZyme
Location: 17770 - 19443 (+)
Gene ID: HRGMv2_2046_25_12
Type: CAZyme
Location: 19549 - 20751 (+)
Type: CAZyme
Location: 19549 - 20751 (+)
Gene ID: HRGMv2_2046_25_13
Type: CAZyme
Location: 20764 - 23718 (+)
Type: CAZyme
Location: 20764 - 23718 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Limivivens
Species
Limivivens faecihominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.