Cluster: HRGMv2_2046_CGC35
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2046
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2046_23 | HRGMv2_2046_23_2 | 1541 | 2449 | + | 3.A.1.1.34 |
| TC | HRGMv2_2046_23 | HRGMv2_2046_23_3 | 2454 | 3272 | + | 3.A.1.1.34 |
| TF | HRGMv2_2046_23 | HRGMv2_2046_23_4 | 3295 | 4731 | + | HTH_AraC |
| TC | HRGMv2_2046_23 | HRGMv2_2046_23_5 | 4747 | 6552 | + | 8.A.59.2.1 |
| peptidase | HRGMv2_2046_23 | HRGMv2_2046_23_6 | 6530 | 7405 | + | S09.UPW |
| sulfatase | HRGMv2_2046_23 | HRGMv2_2046_23_7 | 7392 | 8054 | + | S1_8 |
| CAZyme | HRGMv2_2046_23 | HRGMv2_2046_23_8 | 8070 | 10715 | + | GH2 |
| NULL(UNKNOWN) | HRGMv2_2046_23 | HRGMv2_2046_23_9 | 10845 | 11051 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2046_23 | HRGMv2_2046_23_10 | 11086 | 13263 | + | GH35 |
Gene ID: HRGMv2_2046_23_2
Type: TC
Location: 1541 - 2449 (+)
Type: TC
Location: 1541 - 2449 (+)
Gene ID: HRGMv2_2046_23_3
Type: TC
Location: 2454 - 3272 (+)
Type: TC
Location: 2454 - 3272 (+)
Gene ID: HRGMv2_2046_23_4
Type: TF
Location: 3295 - 4731 (+)
Type: TF
Location: 3295 - 4731 (+)
Gene ID: HRGMv2_2046_23_5
Type: TC
Location: 4747 - 6552 (+)
Type: TC
Location: 4747 - 6552 (+)
Gene ID: HRGMv2_2046_23_6
Type: peptidase
Location: 6530 - 7405 (+)
Type: peptidase
Location: 6530 - 7405 (+)
Gene ID: HRGMv2_2046_23_7
Type: sulfatase
Location: 7392 - 8054 (+)
Type: sulfatase
Location: 7392 - 8054 (+)
Gene ID: HRGMv2_2046_23_8
Type: CAZyme
Location: 8070 - 10715 (+)
Type: CAZyme
Location: 8070 - 10715 (+)
Gene ID: HRGMv2_2046_23_9
Type:
Location: 10845 - 11051 (+)
Type:
Location: 10845 - 11051 (+)
Gene ID: HRGMv2_2046_23_10
Type: CAZyme
Location: 11086 - 13263 (+)
Type: CAZyme
Location: 11086 - 13263 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Limivivens
Species
Limivivens faecihominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.