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Cluster: HRGMv2_2046_CGC32

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2046_19 HRGMv2_2046_19_12 15882 16850 - 3.A.1.5.20
TC HRGMv2_2046_19 HRGMv2_2046_19_13 16868 17842 - 3.A.1.5.20
TC HRGMv2_2046_19 HRGMv2_2046_19_14 17859 18779 - 3.A.1.5.11
TC HRGMv2_2046_19 HRGMv2_2046_19_15 18797 19717 - 3.A.1.5.11
TC HRGMv2_2046_19 HRGMv2_2046_19_16 19828 21381 - 3.A.1.5.11
pfam HRGMv2_2046_19 HRGMv2_2046_19_17 21814 22434 + Flavodoxin_2 | FMN_red
TC HRGMv2_2046_19 HRGMv2_2046_19_18 22458 24224 + 8.A.59.2.1
TF HRGMv2_2046_19 HRGMv2_2046_19_19 24196 25440 + HTH_AraC
TC HRGMv2_2046_19 HRGMv2_2046_19_20 25662 27299 + 3.A.1.1.9
TC HRGMv2_2046_19 HRGMv2_2046_19_21 27596 28453 + 3.A.1.1.9
TC HRGMv2_2046_19 HRGMv2_2046_19_22 28466 29350 + 3.A.1.1.9
CAZyme HRGMv2_2046_19 HRGMv2_2046_19_23 29369 31927 + GH97
TC HRGMv2_2046_19 HRGMv2_2046_19_24 32319 33206 + 2.A.115.1.1
peptidase HRGMv2_2046_19 HRGMv2_2046_19_25 33658 35763 + C40.UPW
pfam HRGMv2_2046_19 HRGMv2_2046_19_26 35820 36230 + HAAS
TC HRGMv2_2046_19 HRGMv2_2046_19_27 36246 37013 + 2.A.79.1.5
pfam HRGMv2_2046_19 HRGMv2_2046_19_28 37010 37462 + ThrE_2
TC HRGMv2_2046_19 HRGMv2_2046_19_29 37480 38544 + 9.A.23.1.1
pfam HRGMv2_2046_19 HRGMv2_2046_19_30 38578 39693 + DUF362
TC HRGMv2_2046_19 HRGMv2_2046_19_31 39784 41436 + 2.A.35.2.1
Gene ID: HRGMv2_2046_19_12
Type: TC
Location: 15882 - 16850 (-)
Gene ID: HRGMv2_2046_19_13
Type: TC
Location: 16868 - 17842 (-)
Gene ID: HRGMv2_2046_19_14
Type: TC
Location: 17859 - 18779 (-)
Gene ID: HRGMv2_2046_19_15
Type: TC
Location: 18797 - 19717 (-)
Gene ID: HRGMv2_2046_19_16
Type: TC
Location: 19828 - 21381 (-)
Gene ID: HRGMv2_2046_19_17
Type: pfam
Location: 21814 - 22434 (+)
Gene ID: HRGMv2_2046_19_18
Type: TC
Location: 22458 - 24224 (+)
Gene ID: HRGMv2_2046_19_19
Type: TF
Location: 24196 - 25440 (+)
Gene ID: HRGMv2_2046_19_20
Type: TC
Location: 25662 - 27299 (+)
Gene ID: HRGMv2_2046_19_21
Type: TC
Location: 27596 - 28453 (+)
Gene ID: HRGMv2_2046_19_22
Type: TC
Location: 28466 - 29350 (+)
Gene ID: HRGMv2_2046_19_23
Type: CAZyme
Location: 29369 - 31927 (+)
Gene ID: HRGMv2_2046_19_24
Type: TC
Location: 32319 - 33206 (+)
Gene ID: HRGMv2_2046_19_25
Type: peptidase
Location: 33658 - 35763 (+)
Gene ID: HRGMv2_2046_19_26
Type: pfam
Location: 35820 - 36230 (+)
Gene ID: HRGMv2_2046_19_27
Type: TC
Location: 36246 - 37013 (+)
Gene ID: HRGMv2_2046_19_28
Type: pfam
Location: 37010 - 37462 (+)
Gene ID: HRGMv2_2046_19_29
Type: TC
Location: 37480 - 38544 (+)
Gene ID: HRGMv2_2046_19_30
Type: pfam
Location: 38578 - 39693 (+)
Gene ID: HRGMv2_2046_19_31
Type: TC
Location: 39784 - 41436 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2046_19_15 vegan > omnivore 1.68737 0.01226

🧭 Explore Read Mapping of CGC

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