Cluster: HRGMv2_2046_CGC30
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_2046
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2046_18 | HRGMv2_2046_18_1 | 93 | 680 | - | 2.A.107.1.2 |
| CAZyme | HRGMv2_2046_18 | HRGMv2_2046_18_2 | 1200 | 3431 | + | GH13_4 |
| pfam | HRGMv2_2046_18 | HRGMv2_2046_18_3 | 3431 | 4975 | + | RACo_C_ter | RACo_linker | Raco_middle |
| CAZyme | HRGMv2_2046_18 | HRGMv2_2046_18_4 | 5026 | 7419 | + | GH31_15 |
| CAZyme | HRGMv2_2046_18 | HRGMv2_2046_18_5 | 7719 | 10790 | + | GH2 |
| TF | HRGMv2_2046_18 | HRGMv2_2046_18_6 | 10793 | 11677 | - | HTH_AraC |
| CAZyme | HRGMv2_2046_18 | HRGMv2_2046_18_7 | 11891 | 15181 | + | CBM67 | GH78 |
| TF | HRGMv2_2046_18 | HRGMv2_2046_18_8 | 15745 | 16728 | + | LacI |
| STP | HRGMv2_2046_18 | HRGMv2_2046_18_9 | 16855 | 18126 | + | SBP_bac_1 |
| TC | HRGMv2_2046_18 | HRGMv2_2046_18_10 | 18417 | 19304 | + | 3.A.1.1.4 |
| TC | HRGMv2_2046_18 | HRGMv2_2046_18_11 | 19301 | 20125 | + | 3.A.1.1.34 |
| CAZyme | HRGMv2_2046_18 | HRGMv2_2046_18_12 | 20141 | 21499 | + | GH1 |
| CAZyme | HRGMv2_2046_18 | HRGMv2_2046_18_13 | 21515 | 22765 | + | GH43_35 |
Gene ID: HRGMv2_2046_18_1
Type: TC
Location: 93 - 680 (-)
Type: TC
Location: 93 - 680 (-)
Gene ID: HRGMv2_2046_18_2
Type: CAZyme
Location: 1200 - 3431 (+)
Type: CAZyme
Location: 1200 - 3431 (+)
Gene ID: HRGMv2_2046_18_3
Type: pfam
Location: 3431 - 4975 (+)
Type: pfam
Location: 3431 - 4975 (+)
Gene ID: HRGMv2_2046_18_4
Type: CAZyme
Location: 5026 - 7419 (+)
Type: CAZyme
Location: 5026 - 7419 (+)
Gene ID: HRGMv2_2046_18_5
Type: CAZyme
Location: 7719 - 10790 (+)
Type: CAZyme
Location: 7719 - 10790 (+)
Gene ID: HRGMv2_2046_18_6
Type: TF
Location: 10793 - 11677 (-)
Type: TF
Location: 10793 - 11677 (-)
Gene ID: HRGMv2_2046_18_7
Type: CAZyme
Location: 11891 - 15181 (+)
Type: CAZyme
Location: 11891 - 15181 (+)
Gene ID: HRGMv2_2046_18_8
Type: TF
Location: 15745 - 16728 (+)
Type: TF
Location: 15745 - 16728 (+)
Gene ID: HRGMv2_2046_18_9
Type: STP
Location: 16855 - 18126 (+)
Type: STP
Location: 16855 - 18126 (+)
Gene ID: HRGMv2_2046_18_10
Type: TC
Location: 18417 - 19304 (+)
Type: TC
Location: 18417 - 19304 (+)
Gene ID: HRGMv2_2046_18_11
Type: TC
Location: 19301 - 20125 (+)
Type: TC
Location: 19301 - 20125 (+)
Gene ID: HRGMv2_2046_18_12
Type: CAZyme
Location: 20141 - 21499 (+)
Type: CAZyme
Location: 20141 - 21499 (+)
Gene ID: HRGMv2_2046_18_13
Type: CAZyme
Location: 21515 - 22765 (+)
Type: CAZyme
Location: 21515 - 22765 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Limivivens
Species
Limivivens faecihominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.