Cluster: HRGMv2_2046_CGC28
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2046
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2046_14 | HRGMv2_2046_14_47 | 53422 | 54297 | + | 3.A.1.1.28 |
| TC | HRGMv2_2046_14 | HRGMv2_2046_14_48 | 54297 | 55130 | + | 3.A.1.1.45 |
| pfam | HRGMv2_2046_14 | HRGMv2_2046_14_49 | 55130 | 55936 | + | Lactamase_B |
| CAZyme | HRGMv2_2046_14 | HRGMv2_2046_14_50 | 55979 | 57622 | + | CBM91 | GH43_11 |
| CAZyme | HRGMv2_2046_14 | HRGMv2_2046_14_51 | 57703 | 60138 | + | GH2 |
| CAZyme | HRGMv2_2046_14 | HRGMv2_2046_14_52 | 60223 | 61587 | + | GH1 |
Gene ID: HRGMv2_2046_14_47
Type: TC
Location: 53422 - 54297 (+)
Type: TC
Location: 53422 - 54297 (+)
Gene ID: HRGMv2_2046_14_48
Type: TC
Location: 54297 - 55130 (+)
Type: TC
Location: 54297 - 55130 (+)
Gene ID: HRGMv2_2046_14_49
Type: pfam
Location: 55130 - 55936 (+)
Type: pfam
Location: 55130 - 55936 (+)
Gene ID: HRGMv2_2046_14_50
Type: CAZyme
Location: 55979 - 57622 (+)
Type: CAZyme
Location: 55979 - 57622 (+)
Gene ID: HRGMv2_2046_14_51
Type: CAZyme
Location: 57703 - 60138 (+)
Type: CAZyme
Location: 57703 - 60138 (+)
Gene ID: HRGMv2_2046_14_52
Type: CAZyme
Location: 60223 - 61587 (+)
Type: CAZyme
Location: 60223 - 61587 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Limivivens
Species
Limivivens faecihominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.