Cluster: HRGMv2_2046_CGC25
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2046
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2046_13 | HRGMv2_2046_13_32 | 27513 | 29999 | - | GH38 |
| TC | HRGMv2_2046_13 | HRGMv2_2046_13_33 | 30015 | 30695 | - | 3.A.1.1.29 |
| STP | HRGMv2_2046_13 | HRGMv2_2046_13_34 | 31199 | 31546 | + | HTH_18 |
| CAZyme | HRGMv2_2046_13 | HRGMv2_2046_13_35 | 31669 | 33708 | - | GH42 |
| pfam | HRGMv2_2046_13 | HRGMv2_2046_13_36 | 33917 | 35089 | + | MFS_1 |
| pfam | HRGMv2_2046_13 | HRGMv2_2046_13_37 | 35640 | 36479 | - | AP_endonuc_2 |
| CAZyme | HRGMv2_2046_13 | HRGMv2_2046_13_38 | 36500 | 37534 | - | GH177 |
| pfam | HRGMv2_2046_13 | HRGMv2_2046_13_39 | 37871 | 39079 | + | ROK | HTH_24 |
| CAZyme | HRGMv2_2046_13 | HRGMv2_2046_13_40 | 39090 | 40148 | + | GH179 |
| sulfatase | HRGMv2_2046_13 | HRGMv2_2046_13_41 | 40242 | 41429 | - | S1_2 |
| TC | HRGMv2_2046_13 | HRGMv2_2046_13_42 | 41761 | 42615 | - | 2.A.115.1.1 |
| pfam | HRGMv2_2046_13 | HRGMv2_2046_13_43 | 42860 | 43576 | + | BMC | BMC |
| pfam | HRGMv2_2046_13 | HRGMv2_2046_13_44 | 43586 | 44566 | + | ApbE |
| TC | HRGMv2_2046_13 | HRGMv2_2046_13_45 | 44731 | 45417 | - | 2.A.115.2.8 |
Gene ID: HRGMv2_2046_13_32
Type: CAZyme
Location: 27513 - 29999 (-)
Type: CAZyme
Location: 27513 - 29999 (-)
Gene ID: HRGMv2_2046_13_33
Type: TC
Location: 30015 - 30695 (-)
Type: TC
Location: 30015 - 30695 (-)
Gene ID: HRGMv2_2046_13_34
Type: STP
Location: 31199 - 31546 (+)
Type: STP
Location: 31199 - 31546 (+)
Gene ID: HRGMv2_2046_13_35
Type: CAZyme
Location: 31669 - 33708 (-)
Type: CAZyme
Location: 31669 - 33708 (-)
Gene ID: HRGMv2_2046_13_36
Type: pfam
Location: 33917 - 35089 (+)
Type: pfam
Location: 33917 - 35089 (+)
Gene ID: HRGMv2_2046_13_37
Type: pfam
Location: 35640 - 36479 (-)
Type: pfam
Location: 35640 - 36479 (-)
Gene ID: HRGMv2_2046_13_38
Type: CAZyme
Location: 36500 - 37534 (-)
Type: CAZyme
Location: 36500 - 37534 (-)
Gene ID: HRGMv2_2046_13_39
Type: pfam
Location: 37871 - 39079 (+)
Type: pfam
Location: 37871 - 39079 (+)
Gene ID: HRGMv2_2046_13_40
Type: CAZyme
Location: 39090 - 40148 (+)
Type: CAZyme
Location: 39090 - 40148 (+)
Gene ID: HRGMv2_2046_13_41
Type: sulfatase
Location: 40242 - 41429 (-)
Type: sulfatase
Location: 40242 - 41429 (-)
Gene ID: HRGMv2_2046_13_42
Type: TC
Location: 41761 - 42615 (-)
Type: TC
Location: 41761 - 42615 (-)
Gene ID: HRGMv2_2046_13_43
Type: pfam
Location: 42860 - 43576 (+)
Type: pfam
Location: 42860 - 43576 (+)
Gene ID: HRGMv2_2046_13_44
Type: pfam
Location: 43586 - 44566 (+)
Type: pfam
Location: 43586 - 44566 (+)
Gene ID: HRGMv2_2046_13_45
Type: TC
Location: 44731 - 45417 (-)
Type: TC
Location: 44731 - 45417 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Limivivens
Species
Limivivens faecihominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.