Cluster: HRGMv2_2046_CGC24
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2046
- CGC Family ID: CGCFAM_09018
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2046_12 | HRGMv2_2046_12_55 | 56772 | 58340 | - | 3.A.1.1.9 |
| TC | HRGMv2_2046_12 | HRGMv2_2046_12_56 | 58603 | 59559 | - | 3.A.1.1.29 |
| TC | HRGMv2_2046_12 | HRGMv2_2046_12_57 | 59622 | 60779 | - | 3.A.1.1.10 |
| CAZyme | HRGMv2_2046_12 | HRGMv2_2046_12_58 | 61062 | 62957 | - | GH129 |
| TF | HRGMv2_2046_12 | HRGMv2_2046_12_59 | 63178 | 63990 | - | HTH_AraC |
| CAZyme | HRGMv2_2046_12 | HRGMv2_2046_12_60 | 64125 | 65627 | + | GH51_1 |
Gene ID: HRGMv2_2046_12_55
Type: TC
Location: 56772 - 58340 (-)
Type: TC
Location: 56772 - 58340 (-)
Gene ID: HRGMv2_2046_12_56
Type: TC
Location: 58603 - 59559 (-)
Type: TC
Location: 58603 - 59559 (-)
Gene ID: HRGMv2_2046_12_57
Type: TC
Location: 59622 - 60779 (-)
Type: TC
Location: 59622 - 60779 (-)
Gene ID: HRGMv2_2046_12_58
Type: CAZyme
Location: 61062 - 62957 (-)
Type: CAZyme
Location: 61062 - 62957 (-)
Gene ID: HRGMv2_2046_12_59
Type: TF
Location: 63178 - 63990 (-)
Type: TF
Location: 63178 - 63990 (-)
Gene ID: HRGMv2_2046_12_60
Type: CAZyme
Location: 64125 - 65627 (+)
Type: CAZyme
Location: 64125 - 65627 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Limivivens
Species
Limivivens faecihominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.