Cluster: HRGMv2_2046_CGC23
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2046
- CGC Family ID: CGCFAM_00208
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2046_11 | HRGMv2_2046_11_42 | 43133 | 44215 | - | GT2 |
| TC | HRGMv2_2046_11 | HRGMv2_2046_11_43 | 44221 | 45765 | - | 2.A.66.1.40 |
| pfam | HRGMv2_2046_11 | HRGMv2_2046_11_44 | 45814 | 47100 | - | DUF4832 | DUF4874 |
| CAZyme | HRGMv2_2046_11 | HRGMv2_2046_11_45 | 47112 | 48308 | - | GT4 |
| pfam | HRGMv2_2046_11 | HRGMv2_2046_11_46 | 48312 | 49772 | - | PelG |
| CAZyme | HRGMv2_2046_11 | HRGMv2_2046_11_47 | 49791 | 51257 | - | GT4 |
Gene ID: HRGMv2_2046_11_42
Type: CAZyme
Location: 43133 - 44215 (-)
Type: CAZyme
Location: 43133 - 44215 (-)
Gene ID: HRGMv2_2046_11_43
Type: TC
Location: 44221 - 45765 (-)
Type: TC
Location: 44221 - 45765 (-)
Gene ID: HRGMv2_2046_11_44
Type: pfam
Location: 45814 - 47100 (-)
Type: pfam
Location: 45814 - 47100 (-)
Gene ID: HRGMv2_2046_11_45
Type: CAZyme
Location: 47112 - 48308 (-)
Type: CAZyme
Location: 47112 - 48308 (-)
Gene ID: HRGMv2_2046_11_46
Type: pfam
Location: 48312 - 49772 (-)
Type: pfam
Location: 48312 - 49772 (-)
Gene ID: HRGMv2_2046_11_47
Type: CAZyme
Location: 49791 - 51257 (-)
Type: CAZyme
Location: 49791 - 51257 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Limivivens
Species
Limivivens faecihominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2046_11_45 | vegan > omnivore | 1.53125 | 0.00780 |
| HRGMv2_2046_11_46 | vegan > omnivore | 1.33874 | 0.02864 |
| HRGMv2_2046_11_47 | vegan > omnivore | 1.40376 | 0.01049 |