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Cluster: HRGMv2_2046_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2046_10 HRGMv2_2046_10_10 9960 10784 + 3.A.1.104.1
TC HRGMv2_2046_10 HRGMv2_2046_10_11 10806 12062 + 3.A.1.103.6
pfam HRGMv2_2046_10 HRGMv2_2046_10_12 12077 13006 + RrnaAD | PCMT | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31
NULL(UNKNOWN) HRGMv2_2046_10 HRGMv2_2046_10_13 13003 14295 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2046_10 HRGMv2_2046_10_14 14316 16859 + GT2 | GT2
CAZyme HRGMv2_2046_10 HRGMv2_2046_10_15 16861 19359 + GT2 | GT2
CAZyme HRGMv2_2046_10 HRGMv2_2046_10_16 19356 21767 + GT2 | GT2
pfam HRGMv2_2046_10 HRGMv2_2046_10_17 21790 24228 + YfhO | YfhO
STP HRGMv2_2046_10 HRGMv2_2046_10_18 24215 25342 + Aminotran_1_2
CAZyme HRGMv2_2046_10 HRGMv2_2046_10_19 25335 27137 + GT2 | GT2
CAZyme HRGMv2_2046_10 HRGMv2_2046_10_20 27157 28122 + GT2
TC HRGMv2_2046_10 HRGMv2_2046_10_21 28206 29606 + 9.B.18.1.1
pfam HRGMv2_2046_10 HRGMv2_2046_10_22 29627 31021 + LytR_cpsA_psr
CAZyme HRGMv2_2046_10 HRGMv2_2046_10_23 31021 31944 + GT2
Gene ID: HRGMv2_2046_10_10
Type: TC
Location: 9960 - 10784 (+)
Gene ID: HRGMv2_2046_10_11
Type: TC
Location: 10806 - 12062 (+)
Gene ID: HRGMv2_2046_10_12
Type: pfam
Location: 12077 - 13006 (+)
Gene ID: HRGMv2_2046_10_13
Type:
Location: 13003 - 14295 (+)
Gene ID: HRGMv2_2046_10_14
Type: CAZyme
Location: 14316 - 16859 (+)
Gene ID: HRGMv2_2046_10_15
Type: CAZyme
Location: 16861 - 19359 (+)
Gene ID: HRGMv2_2046_10_16
Type: CAZyme
Location: 19356 - 21767 (+)
Gene ID: HRGMv2_2046_10_17
Type: pfam
Location: 21790 - 24228 (+)
Gene ID: HRGMv2_2046_10_18
Type: STP
Location: 24215 - 25342 (+)
Gene ID: HRGMv2_2046_10_19
Type: CAZyme
Location: 25335 - 27137 (+)
Gene ID: HRGMv2_2046_10_20
Type: CAZyme
Location: 27157 - 28122 (+)
Gene ID: HRGMv2_2046_10_21
Type: TC
Location: 28206 - 29606 (+)
Gene ID: HRGMv2_2046_10_22
Type: pfam
Location: 29627 - 31021 (+)
Gene ID: HRGMv2_2046_10_23
Type: CAZyme
Location: 31021 - 31944 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2046_10_19 vegan > omnivore 1.02215 0.02864

🧭 Explore Read Mapping of CGC

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