Cluster: HRGMv2_2046_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2046
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2046_1 | HRGMv2_2046_1_16 | 17374 | 18306 | + | 3.A.1.1.10 |
| TC | HRGMv2_2046_1 | HRGMv2_2046_1_17 | 18318 | 19211 | + | 3.A.1.1.29 |
| TC | HRGMv2_2046_1 | HRGMv2_2046_1_18 | 19260 | 20843 | + | 3.A.1.1.29 |
| CAZyme | HRGMv2_2046_1 | HRGMv2_2046_1_19 | 20877 | 22304 | + | GH32 |
| CAZyme | HRGMv2_2046_1 | HRGMv2_2046_1_20 | 22361 | 23455 | + | GH172 |
| CAZyme | HRGMv2_2046_1 | HRGMv2_2046_1_21 | 23531 | 25138 | + | GH32 |
Gene ID: HRGMv2_2046_1_16
Type: TC
Location: 17374 - 18306 (+)
Type: TC
Location: 17374 - 18306 (+)
Gene ID: HRGMv2_2046_1_17
Type: TC
Location: 18318 - 19211 (+)
Type: TC
Location: 18318 - 19211 (+)
Gene ID: HRGMv2_2046_1_18
Type: TC
Location: 19260 - 20843 (+)
Type: TC
Location: 19260 - 20843 (+)
Gene ID: HRGMv2_2046_1_19
Type: CAZyme
Location: 20877 - 22304 (+)
Type: CAZyme
Location: 20877 - 22304 (+)
Gene ID: HRGMv2_2046_1_20
Type: CAZyme
Location: 22361 - 23455 (+)
Type: CAZyme
Location: 22361 - 23455 (+)
Gene ID: HRGMv2_2046_1_21
Type: CAZyme
Location: 23531 - 25138 (+)
Type: CAZyme
Location: 23531 - 25138 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Limivivens
Species
Limivivens faecihominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.