Cluster: HRGMv2_2046_CGC14
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2046
- CGC Family ID: CGCFAM_01164
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2046_8 | HRGMv2_2046_8_29 | 27205 | 29304 | + | GH36 |
| NULL(UNKNOWN) | HRGMv2_2046_8 | HRGMv2_2046_8_30 | 29306 | 30247 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2046_8 | HRGMv2_2046_8_31 | 30652 | 32436 | + | GH2 |
| pfam | HRGMv2_2046_8 | HRGMv2_2046_8_32 | 32518 | 34296 | - | DUF4340 |
| pfam | HRGMv2_2046_8 | HRGMv2_2046_8_33 | 34296 | 35750 | - | ABC_transp_aux | DUF7088 |
| TC | HRGMv2_2046_8 | HRGMv2_2046_8_34 | 35767 | 36630 | - | 3.A.1.132.1 |
| TC | HRGMv2_2046_8 | HRGMv2_2046_8_35 | 36627 | 37682 | - | 3.A.1.132.1 |
Gene ID: HRGMv2_2046_8_29
Type: CAZyme
Location: 27205 - 29304 (+)
Type: CAZyme
Location: 27205 - 29304 (+)
Gene ID: HRGMv2_2046_8_30
Type:
Location: 29306 - 30247 (+)
Type:
Location: 29306 - 30247 (+)
Gene ID: HRGMv2_2046_8_31
Type: CAZyme
Location: 30652 - 32436 (+)
Type: CAZyme
Location: 30652 - 32436 (+)
Gene ID: HRGMv2_2046_8_32
Type: pfam
Location: 32518 - 34296 (-)
Type: pfam
Location: 32518 - 34296 (-)
Gene ID: HRGMv2_2046_8_33
Type: pfam
Location: 34296 - 35750 (-)
Type: pfam
Location: 34296 - 35750 (-)
Gene ID: HRGMv2_2046_8_34
Type: TC
Location: 35767 - 36630 (-)
Type: TC
Location: 35767 - 36630 (-)
Gene ID: HRGMv2_2046_8_35
Type: TC
Location: 36627 - 37682 (-)
Type: TC
Location: 36627 - 37682 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Limivivens
Species
Limivivens faecihominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.