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Cluster: HRGMv2_2046_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2046_1 HRGMv2_2046_1_1 419 1486 - CE4
STP HRGMv2_2046_1 HRGMv2_2046_1_2 1674 2033 + HATPase_c
TC HRGMv2_2046_1 HRGMv2_2046_1_3 2136 3833 + 8.A.59.2.1
TF HRGMv2_2046_1 HRGMv2_2046_1_4 3838 5034 + HTH_AraC | HTH_AraC
STP HRGMv2_2046_1 HRGMv2_2046_1_5 5115 6404 + SBP_bac_1
TC HRGMv2_2046_1 HRGMv2_2046_1_6 6423 7304 + 3.A.1.1.34
TC HRGMv2_2046_1 HRGMv2_2046_1_7 7307 8128 + 3.A.1.1.34
pfam HRGMv2_2046_1 HRGMv2_2046_1_8 8226 8849 + Lactamase_B | Lactamase_B_2
NULL(UNKNOWN) HRGMv2_2046_1 HRGMv2_2046_1_9 9105 10832 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2046_1 HRGMv2_2046_1_10 10923 11849 + 3.A.1.1.29
TC HRGMv2_2046_1 HRGMv2_2046_1_11 11860 12777 + 3.A.1.1.29
CAZyme HRGMv2_2046_1 HRGMv2_2046_1_12 12836 14209 + GH29
Gene ID: HRGMv2_2046_1_1
Type: CAZyme
Location: 419 - 1486 (-)
Gene ID: HRGMv2_2046_1_2
Type: STP
Location: 1674 - 2033 (+)
Gene ID: HRGMv2_2046_1_3
Type: TC
Location: 2136 - 3833 (+)
Gene ID: HRGMv2_2046_1_4
Type: TF
Location: 3838 - 5034 (+)
Gene ID: HRGMv2_2046_1_5
Type: STP
Location: 5115 - 6404 (+)
Gene ID: HRGMv2_2046_1_6
Type: TC
Location: 6423 - 7304 (+)
Gene ID: HRGMv2_2046_1_7
Type: TC
Location: 7307 - 8128 (+)
Gene ID: HRGMv2_2046_1_8
Type: pfam
Location: 8226 - 8849 (+)
Gene ID: HRGMv2_2046_1_9
Type:
Location: 9105 - 10832 (+)
Gene ID: HRGMv2_2046_1_10
Type: TC
Location: 10923 - 11849 (+)
Gene ID: HRGMv2_2046_1_11
Type: TC
Location: 11860 - 12777 (+)
Gene ID: HRGMv2_2046_1_12
Type: CAZyme
Location: 12836 - 14209 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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