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Cluster: HRGMv2_2041_CGC47

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2041_19 HRGMv2_2041_19_39 51867 52502 + 3.A.1.131.1
pfam HRGMv2_2041_19 HRGMv2_2041_19_40 52656 52955 + MannoseP_isomer | Cupin_2
TF HRGMv2_2041_19 HRGMv2_2041_19_41 52968 53909 + HTH_AraC | HTH_AraC
TC HRGMv2_2041_19 HRGMv2_2041_19_42 54113 55489 + 3.A.1.1.4
TC HRGMv2_2041_19 HRGMv2_2041_19_43 55677 56564 + 3.A.1.1.4
TC HRGMv2_2041_19 HRGMv2_2041_19_44 56564 57370 + 3.A.1.1.4
CAZyme HRGMv2_2041_19 HRGMv2_2041_19_45 57469 60507 + GH2
CAZyme HRGMv2_2041_19 HRGMv2_2041_19_46 60574 62601 + GH42
Gene ID: HRGMv2_2041_19_39
Type: TC
Location: 51867 - 52502 (+)
Gene ID: HRGMv2_2041_19_40
Type: pfam
Location: 52656 - 52955 (+)
Gene ID: HRGMv2_2041_19_41
Type: TF
Location: 52968 - 53909 (+)
Gene ID: HRGMv2_2041_19_42
Type: TC
Location: 54113 - 55489 (+)
Gene ID: HRGMv2_2041_19_43
Type: TC
Location: 55677 - 56564 (+)
Gene ID: HRGMv2_2041_19_44
Type: TC
Location: 56564 - 57370 (+)
Gene ID: HRGMv2_2041_19_45
Type: CAZyme
Location: 57469 - 60507 (+)
Gene ID: HRGMv2_2041_19_46
Type: CAZyme
Location: 60574 - 62601 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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