Cluster: HRGMv2_2040_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2040
- CGC Family ID: CGCFAM_00047
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2040_11 | HRGMv2_2040_11_37 | 41803 | 42699 | - | 3.A.1.1.36 |
| TC | HRGMv2_2040_11 | HRGMv2_2040_11_38 | 42701 | 43651 | - | 3.A.1.1.4 |
| NULL(UNKNOWN) | HRGMv2_2040_11 | HRGMv2_2040_11_39 | 43740 | 45095 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_2040_11 | HRGMv2_2040_11_40 | 45128 | 46126 | - | LacI |
| CAZyme | HRGMv2_2040_11 | HRGMv2_2040_11_41 | 46401 | 48854 | + | GH94 |
| CAZyme | HRGMv2_2040_11 | HRGMv2_2040_11_42 | 48878 | 50263 | + | GH1 |
Gene ID: HRGMv2_2040_11_37
Type: TC
Location: 41803 - 42699 (-)
Type: TC
Location: 41803 - 42699 (-)
Gene ID: HRGMv2_2040_11_38
Type: TC
Location: 42701 - 43651 (-)
Type: TC
Location: 42701 - 43651 (-)
Gene ID: HRGMv2_2040_11_39
Type:
Location: 43740 - 45095 (-)
Type:
Location: 43740 - 45095 (-)
Gene ID: HRGMv2_2040_11_40
Type: TF
Location: 45128 - 46126 (-)
Type: TF
Location: 45128 - 46126 (-)
Gene ID: HRGMv2_2040_11_41
Type: CAZyme
Location: 46401 - 48854 (+)
Type: CAZyme
Location: 46401 - 48854 (+)
Gene ID: HRGMv2_2040_11_42
Type: CAZyme
Location: 48878 - 50263 (+)
Type: CAZyme
Location: 48878 - 50263 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.