Cluster: HRGMv2_2040_CGC29
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2040
- CGC Family ID: CGCFAM_02011
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2040_41 | HRGMv2_2040_41_2 | 2039 | 3535 | + | 3.A.1.1.29 |
| TC | HRGMv2_2040_41 | HRGMv2_2040_41_3 | 3550 | 4416 | + | 3.A.1.1.29 |
| NULL(UNKNOWN) | HRGMv2_2040_41 | HRGMv2_2040_41_4 | 4713 | 5603 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2040_41 | HRGMv2_2040_41_5 | 5594 | 7150 | + | GH28 |
| TC | HRGMv2_2040_41 | HRGMv2_2040_41_6 | 7181 | 8971 | + | 3.A.1.106.2 |
Gene ID: HRGMv2_2040_41_2
Type: TC
Location: 2039 - 3535 (+)
Type: TC
Location: 2039 - 3535 (+)
Gene ID: HRGMv2_2040_41_3
Type: TC
Location: 3550 - 4416 (+)
Type: TC
Location: 3550 - 4416 (+)
Gene ID: HRGMv2_2040_41_4
Type:
Location: 4713 - 5603 (+)
Type:
Location: 4713 - 5603 (+)
Gene ID: HRGMv2_2040_41_5
Type: CAZyme
Location: 5594 - 7150 (+)
Type: CAZyme
Location: 5594 - 7150 (+)
Gene ID: HRGMv2_2040_41_6
Type: TC
Location: 7181 - 8971 (+)
Type: TC
Location: 7181 - 8971 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.