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Cluster: HRGMv2_2037_CGC50

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2037_40 HRGMv2_2037_40_1 83 1387 + 3.A.1.1.17
TC HRGMv2_2037_40 HRGMv2_2037_40_2 1451 2326 + 3.A.1.1.11
TC HRGMv2_2037_40 HRGMv2_2037_40_3 2329 3177 + 3.A.1.1.34
CAZyme HRGMv2_2037_40 HRGMv2_2037_40_4 3216 5054 + GH2
STP HRGMv2_2037_40 HRGMv2_2037_40_5 5077 6012 + PfkB
pfam HRGMv2_2037_40 HRGMv2_2037_40_6 6148 6393 - GIY-YIG
CAZyme HRGMv2_2037_40 HRGMv2_2037_40_7 6826 8289 + GH4
NULL(UNKNOWN) HRGMv2_2037_40 HRGMv2_2037_40_8 8279 8722 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2037_40 HRGMv2_2037_40_9 8809 10935 - GH8
TC HRGMv2_2037_40 HRGMv2_2037_40_10 10947 11648 - 3.A.1.122.7
TC HRGMv2_2037_40 HRGMv2_2037_40_11 11776 13416 - 3.A.1.135.9
TC HRGMv2_2037_40 HRGMv2_2037_40_12 13406 15157 - 3.A.1.106.14
Gene ID: HRGMv2_2037_40_1
Type: TC
Location: 83 - 1387 (+)
Gene ID: HRGMv2_2037_40_2
Type: TC
Location: 1451 - 2326 (+)
Gene ID: HRGMv2_2037_40_3
Type: TC
Location: 2329 - 3177 (+)
Gene ID: HRGMv2_2037_40_4
Type: CAZyme
Location: 3216 - 5054 (+)
Gene ID: HRGMv2_2037_40_5
Type: STP
Location: 5077 - 6012 (+)
Gene ID: HRGMv2_2037_40_6
Type: pfam
Location: 6148 - 6393 (-)
Gene ID: HRGMv2_2037_40_7
Type: CAZyme
Location: 6826 - 8289 (+)
Gene ID: HRGMv2_2037_40_8
Type:
Location: 8279 - 8722 (-)
Gene ID: HRGMv2_2037_40_9
Type: CAZyme
Location: 8809 - 10935 (-)
Gene ID: HRGMv2_2037_40_10
Type: TC
Location: 10947 - 11648 (-)
Gene ID: HRGMv2_2037_40_11
Type: TC
Location: 11776 - 13416 (-)
Gene ID: HRGMv2_2037_40_12
Type: TC
Location: 13406 - 15157 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2037_40_7 vegan > omnivore 1.71627 0.01057

🧭 Explore Read Mapping of CGC

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