Cluster: HRGMv2_2037_CGC43
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2037
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2037_29 | HRGMv2_2037_29_3 | 3163 | 4095 | - | 2.A.69.4.5 |
| TC | HRGMv2_2037_29 | HRGMv2_2037_29_4 | 4121 | 5491 | - | 2.A.66.1.32 |
| TC | HRGMv2_2037_29 | HRGMv2_2037_29_5 | 5623 | 8970 | - | 9.B.74.1.3 |
| pfam | HRGMv2_2037_29 | HRGMv2_2037_29_6 | 9270 | 9860 | + | TetR_C_8 |
| NULL(UNKNOWN) | HRGMv2_2037_29 | HRGMv2_2037_29_7 | 9857 | 10027 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2037_29 | HRGMv2_2037_29_8 | 10089 | 14861 | - | 1.C.111.1.10 |
| CAZyme | HRGMv2_2037_29 | HRGMv2_2037_29_9 | 14889 | 16760 | - | GH146 |
Gene ID: HRGMv2_2037_29_3
Type: TC
Location: 3163 - 4095 (-)
Type: TC
Location: 3163 - 4095 (-)
Gene ID: HRGMv2_2037_29_4
Type: TC
Location: 4121 - 5491 (-)
Type: TC
Location: 4121 - 5491 (-)
Gene ID: HRGMv2_2037_29_5
Type: TC
Location: 5623 - 8970 (-)
Type: TC
Location: 5623 - 8970 (-)
Gene ID: HRGMv2_2037_29_6
Type: pfam
Location: 9270 - 9860 (+)
Type: pfam
Location: 9270 - 9860 (+)
Gene ID: HRGMv2_2037_29_7
Type:
Location: 9857 - 10027 (-)
Type:
Location: 9857 - 10027 (-)
Gene ID: HRGMv2_2037_29_8
Type: TC
Location: 10089 - 14861 (-)
Type: TC
Location: 10089 - 14861 (-)
Gene ID: HRGMv2_2037_29_9
Type: CAZyme
Location: 14889 - 16760 (-)
Type: CAZyme
Location: 14889 - 16760 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Limivivens
Species
Limivivens sp905214955
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2037_29_6 | vegan > omnivore | 2.02035 | 0.01057 |