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Cluster: HRGMv2_2037_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2037_28 HRGMv2_2037_28_27 25266 25976 + 2.A.78.1.1
TC HRGMv2_2037_28 HRGMv2_2037_28_28 25960 26292 + 2.A.78.1.1
TC HRGMv2_2037_28 HRGMv2_2037_28_29 26845 28089 + 2.A.1.24.4
CAZyme HRGMv2_2037_28 HRGMv2_2037_28_30 28941 30140 + GT4
pfam HRGMv2_2037_28 HRGMv2_2037_28_31 30101 30703 + VTT_dom
CAZyme HRGMv2_2037_28 HRGMv2_2037_28_32 30867 31880 + GT4
TF HRGMv2_2037_28 HRGMv2_2037_28_33 31901 32605 + Trans_reg_C
STP HRGMv2_2037_28 HRGMv2_2037_28_34 32580 34754 + HATPase_c | HisKA
TC HRGMv2_2037_28 HRGMv2_2037_28_35 35033 36235 + 9.B.10.1.1
Gene ID: HRGMv2_2037_28_27
Type: TC
Location: 25266 - 25976 (+)
Gene ID: HRGMv2_2037_28_28
Type: TC
Location: 25960 - 26292 (+)
Gene ID: HRGMv2_2037_28_29
Type: TC
Location: 26845 - 28089 (+)
Gene ID: HRGMv2_2037_28_30
Type: CAZyme
Location: 28941 - 30140 (+)
Gene ID: HRGMv2_2037_28_31
Type: pfam
Location: 30101 - 30703 (+)
Gene ID: HRGMv2_2037_28_32
Type: CAZyme
Location: 30867 - 31880 (+)
Gene ID: HRGMv2_2037_28_33
Type: TF
Location: 31901 - 32605 (+)
Gene ID: HRGMv2_2037_28_34
Type: STP
Location: 32580 - 34754 (+)
Gene ID: HRGMv2_2037_28_35
Type: TC
Location: 35033 - 36235 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2037_28_28 vegan > omnivore 3.06181 0.01057
HRGMv2_2037_28_32 vegan > omnivore 2.11731 0.01057

🧭 Explore Read Mapping of CGC

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