Cluster: HRGMv2_2037_CGC30
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate: pectin
- Genome ID: HRGMv2_2037
- CGC Family ID: CGCFAM_00378
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2037_11 | HRGMv2_2037_11_36 | 31258 | 33006 | - | 8.A.59.2.1 |
| TF | HRGMv2_2037_11 | HRGMv2_2037_11_37 | 33023 | 33766 | - | HTH_AraC | HTH_AraC |
| STP | HRGMv2_2037_11 | HRGMv2_2037_11_38 | 34008 | 35309 | + | SBP_bac_1 |
| TC | HRGMv2_2037_11 | HRGMv2_2037_11_39 | 35439 | 36344 | + | 3.A.1.1.11 |
| TC | HRGMv2_2037_11 | HRGMv2_2037_11_40 | 36358 | 37200 | + | 3.A.1.1.11 |
| CAZyme | HRGMv2_2037_11 | HRGMv2_2037_11_41 | 37205 | 39448 | + | GH95 |
Gene ID: HRGMv2_2037_11_36
Type: TC
Location: 31258 - 33006 (-)
Type: TC
Location: 31258 - 33006 (-)
Gene ID: HRGMv2_2037_11_37
Type: TF
Location: 33023 - 33766 (-)
Type: TF
Location: 33023 - 33766 (-)
Gene ID: HRGMv2_2037_11_38
Type: STP
Location: 34008 - 35309 (+)
Type: STP
Location: 34008 - 35309 (+)
Gene ID: HRGMv2_2037_11_39
Type: TC
Location: 35439 - 36344 (+)
Type: TC
Location: 35439 - 36344 (+)
Gene ID: HRGMv2_2037_11_40
Type: TC
Location: 36358 - 37200 (+)
Type: TC
Location: 36358 - 37200 (+)
Gene ID: HRGMv2_2037_11_41
Type: CAZyme
Location: 37205 - 39448 (+)
Type: CAZyme
Location: 37205 - 39448 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Limivivens
Species
Limivivens sp905214955
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.